PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G141638_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 706aa MW: 73216.7 Da PI: 6.9123 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4.1e-11 | 272 | 328 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g GRMZM2G141638_P01 272 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 328 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.7 | 8.1e-15 | 371 | 422 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GRMZM2G141638_P01 371 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-8 | 272 | 328 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-17 | 272 | 338 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-14 | 272 | 338 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-22 | 273 | 342 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.28 | 273 | 336 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-12 | 273 | 337 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 274 | 285 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 371 | 422 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-22 | 371 | 432 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-17 | 371 | 432 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-33 | 372 | 436 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 372 | 430 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-18 | 372 | 431 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 412 | 432 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MATVNNWLAF SLSPQELPPS QTTDSTLISA ATADHVSGDV CFNIPQDWSM RGSELSALVA 60 EPKLEDFLGG ISFSEQHHKS NCNLIPSTSS TVCYASSAAS TGYHHQLYQP TSSALHFADS 120 VMVASSAGVH DGGSMLSAAA ANGVAGAASA NGGGIGLSMI KNWLRSQPAP MQPRAAAAEG 180 AQGLSLSMNM AGTTQGAAGM PLLAGERARA PESVSTSAQG GAVVVTAPKE DSGGSGVAGA 240 LVAVSTDTGG SGGASADNTA RKTVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ 300 TRKGRQGGYD KEEKAARAYD LAALKYWGAT TTTNFPVSNY EKELEDMKHM TRQEFVASLR 360 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 420 RGLNAVTNFD MSRYDVKSIL DSSALPIGSA AKRLKEAEAA ASAQHHHAGV VSYDVGRIAS 480 QLGDGGALAA AYGAHYHGAA WPTIAFQPGA ATTGLYHPYA QQPMRGGGWC KQEQDHAVIA 540 AAHSLQDLHH LNLGAAGAHD FFSAGQQAAA AAAMHGLASI DSASLEHSTG SNSVVYNGGV 600 GDSNGASAVG SGGGYMMPMS AAGATTTSAM VSHEQMHARA YDEAKQAAQM GYESYLVNAE 660 NNGGGRMSAW GTVVSAAAAA AASSNDNIAA DVGHGGAQLF SVWNDT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G141638 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G141638_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240892 | 1e-176 | AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674696.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM2 | ||||
Swissprot | Q8LSN2 | 1e-131 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A1D6N4F3 | 0.0 | A0A1D6N4F3_MAIZE; AP2-like ethylene-responsive transcription factor BBM | ||||
STRING | GRMZM2G141638_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-115 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G141638_P01 |