PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141219_P03
Common NameLOC100279914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 572aa    MW: 62302.1 Da    PI: 10.28
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141219_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17310361155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  GRMZM2G141219_P03 310 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAMAYDMAAIEYRG 361
                        89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.64210275IPR001471AP2/ERF domain
SMARTSM003800.0056225281IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-8239277IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-7245277IPR001471AP2/ERF domain
CDDcd000183.66E-22310371No hitNo description
PfamPF008472.5E-13310361IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17310371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-17311370IPR001471AP2/ERF domain
SMARTSM003801.9E-25311375IPR001471AP2/ERF domain
PROSITE profilePS5103218.294311369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MRWSRAKNFR EREREERERP ACLSRLSSFL LLCSFGICPA LQTSTKFGRP ITNPFPVSPS  60
ASSLKRPPPK APCSWPPTSP SSFLLSSLSP HAQWRGLART APPPPTTTTA TPPTPATPPS  120
TSRRASSRSA RGRACPGSPP RSAAPSTAAS HGTGGRGGSR LTCGTRTAGT SPRTRRASKF  180
TSVSEALESR SWHDTHEEEE EELRPHSLPL SLGKRKKKNI FSALVCIHQW RSVLLTIVSL  240
HGLHAGAYDD EDAAARAYDL AALKYWGPDT ILNFPASAYE AELKEMEGQS REEYIGSLRR  300
KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYGTQEEAAM AYDMAAIEYR  360
GLNAVTNFDL SRYIKWLRPG AGAAQNPHPM LDGLAQQLLL SPEGTIDGAA FHQQQHDHRQ  420
QGAAELPLPP RASLGHTPTT SALGLLLQSS KFKEMIQRAS AAESGTTTVT TTSSSSSQPP  480
TPTPTPSPSP PPTPPVQPAR DASPQCSFPE DIQTFFGCED VAGVGAGVDV DALFFGDLAA  540
RMELSRHLRT KKMVRHTKQE RQQNRQTAPS LF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212218GKRKKKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.188410.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141219
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141219_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699100.0BT069910.1 Zea mays full-length cDNA clone ZM_BFb0327D19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651355.10.0putative AP2/EREBP transcription factor superfamily protein isoform X1
TrEMBLB4FR940.0B4FR94_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G141219_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.21e-58ARIA-interacting double AP2 domain protein