PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G141219_P02 | ||||||||
Common Name | LOC100279914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 396aa MW: 43230 Da PI: 9.0961 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 52 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ k+++lg ++ ++ Aa+a++ a++k++g GRMZM2G141219_P02 52 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEDAAARAYDLAALKYWG 111 78*******************888866656446**********99*************98 PP | |||||||
2 | AP2 | 55.4 | 1.5e-17 | 154 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g GRMZM2G141219_P02 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAMAYDMAAIEYRG 205 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-12 | 52 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-17 | 52 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.442 | 53 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-24 | 53 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-16 | 53 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 54 | 65 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 154 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.17E-22 | 154 | 215 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 154 | 215 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-25 | 155 | 219 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-17 | 155 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.294 | 155 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 195 | 215 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MARPRKNSAA AANNNNSNTT NAGNAAVDLA ARVKPKRTRK SVPRESPSQR SSVYRGVTRH 60 RWTGRFEAHL WDKNSWNESQ NKKGKQVYLG AYDDEDAAAR AYDLAALKYW GPDTILNFPA 120 SAYEAELKEM EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY 180 LYLGTYGTQE EAAMAYDMAA IEYRGLNAVT NFDLSRYIKW LRPGAGAAQN PHPMLDGLAQ 240 QLLLSPEGTI DGAAFHQQQH DHRQQGAAEL PLPPRASLGH TPTTSALGLL LQSSKFKEMI 300 QRASAAESGT TTVTTTSSSS SQPPTPTPTP SPSPPPTPPV QPARDASPQC SFPEDIQTFF 360 GCEDVAGVGA GVDVDALFFG DLAAYASPAF HFEMDL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18841 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G141219 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G141219_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055111 | 0.0 | BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146338.1 | 0.0 | uncharacterized LOC100279914 | ||||
Swissprot | Q94AN4 | 1e-107 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | B8A0L9 | 0.0 | B8A0L9_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G141219_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 2e-95 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G141219_P02 |
Entrez Gene | 100279914 |
Publications ? help Back to Top | |||
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