PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141219_P02
Common NameLOC100279914
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 396aa    MW: 43230 Da    PI: 9.0961
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141219_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-1652111155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  s+n    k+ k+++lg ++ ++ Aa+a++ a++k++g
  GRMZM2G141219_P02  52 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEDAAARAYDLAALKYWG 111
                        78*******************888866656446**********99*************98 PP

2AP255.41.5e-17154205155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  GRMZM2G141219_P02 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAMAYDMAAIEYRG 205
                        89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-1252111IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1752121IPR016177DNA-binding domain
PROSITE profilePS5103220.44253119IPR001471AP2/ERF domain
SMARTSM003801.6E-2453125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1653121IPR001471AP2/ERF domain
PRINTSPR003674.8E-65465IPR001471AP2/ERF domain
PfamPF008471.5E-13154205IPR001471AP2/ERF domain
CDDcd000183.17E-22154215No hitNo description
SuperFamilySSF541717.19E-18154215IPR016177DNA-binding domain
SMARTSM003801.9E-25155219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17155214IPR001471AP2/ERF domain
PROSITE profilePS5103218.294155213IPR001471AP2/ERF domain
PRINTSPR003674.8E-6195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006341anatomyprimary shoot system
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MARPRKNSAA AANNNNSNTT NAGNAAVDLA ARVKPKRTRK SVPRESPSQR SSVYRGVTRH  60
RWTGRFEAHL WDKNSWNESQ NKKGKQVYLG AYDDEDAAAR AYDLAALKYW GPDTILNFPA  120
SAYEAELKEM EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYGTQE EAAMAYDMAA IEYRGLNAVT NFDLSRYIKW LRPGAGAAQN PHPMLDGLAQ  240
QLLLSPEGTI DGAAFHQQQH DHRQQGAAEL PLPPRASLGH TPTTSALGLL LQSSKFKEMI  300
QRASAAESGT TTVTTTSSSS SQPPTPTPTP SPSPPPTPPV QPARDASPQC SFPEDIQTFF  360
GCEDVAGVGA GVDVDALFFG DLAAYASPAF HFEMDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.188410.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141219
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141219_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551110.0BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146338.10.0uncharacterized LOC100279914
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB8A0L90.0B8A0L9_MAIZE; Uncharacterized protein
STRINGGRMZM2G141219_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Kilaru A, et al.
    Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.
    BMC Plant Biol., 2015. 15: p. 203
    [PMID:26276496]