PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141219_P01
Common NameEREB143, LOC100279914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 416aa    MW: 45795.1 Da    PI: 10.0854
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141219_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-1652111155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  s+n    k+ k+++lg ++ ++ Aa+a++ a++k++g
  GRMZM2G141219_P01  52 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEDAAARAYDLAALKYWG 111
                        78*******************888866656446**********99*************98 PP
2AP255.31.6e-17154205155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  GRMZM2G141219_P01 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAMAYDMAAIEYRG 205
                        89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-1752121IPR016177DNA-binding domain
PfamPF008472.6E-1252111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1653121IPR001471AP2/ERF domain
PROSITE profilePS5103220.44253119IPR001471AP2/ERF domain
SMARTSM003801.6E-2453125IPR001471AP2/ERF domain
PRINTSPR003675.2E-65465IPR001471AP2/ERF domain
CDDcd000184.86E-22154215No hitNo description
SuperFamilySSF541717.85E-18154215IPR016177DNA-binding domain
PfamPF008471.6E-13154205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17155214IPR001471AP2/ERF domain
SMARTSM003801.9E-25155219IPR001471AP2/ERF domain
PROSITE profilePS5103218.294155213IPR001471AP2/ERF domain
PRINTSPR003675.2E-6195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MARPRKNSAA AANNNNSNTT NAGNAAVDLA ARVKPKRTRK SVPRESPSQR SSVYRGVTRH  60
RWTGRFEAHL WDKNSWNESQ NKKGKQVYLG AYDDEDAAAR AYDLAALKYW GPDTILNFPA  120
SAYEAELKEM EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYGTQE EAAMAYDMAA IEYRGLNAVT NFDLSRYIKW LRPGAGAAQN PHPMLDGLAQ  240
QLLLSPEGTI DGAAFHQQQH DHRQQGAAEL PLPPRASLGH TPTTSALGLL LQSSKFKEMI  300
QRASAAESGT TTVTTTSSSS SQPPTPTPTP SPSPPPTPPV QPARDASPQC SFPEDIQTFF  360
GCEDVAGVGA GVDVDALFFG DLAARMELSR HLRTKKMVRH TKQERQQNRQ TAPSLF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.188410.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141219
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141219_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396320.0BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651355.10.0putative AP2/EREBP transcription factor superfamily protein isoform X1
SwissprotQ94AN41e-102AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB4FR940.0B4FR94_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G141219_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Kilaru A, et al.
    Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.
    BMC Plant Biol., 2015. 15: p. 203
    [PMID:26276496]