PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141031_P01
Common NameLOC100383692
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 481aa    MW: 51624.4 Da    PI: 8.5083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141031_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-065072123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++Cg+ F r  nL+ H r+H
  GRMZM2G141031_P01 50 YVCEICGQGFQRDQNLQMHRRRH 72
                       9*********************9 PP
2zf-C2H211.70.00081129150223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C  C+k +  +s++k H++t+
  GRMZM2G141031_P01 129 ACARCSKAYAVHSDYKAHLKTC 150
                        6*******************98 PP
3zf-C2H210.80.0015158176523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg++Fsr +++  H+ t+
  GRMZM2G141031_P01 158 DCGRVFSRVESFIEHQDTC 176
                        9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.97E-64972No hitNo description
Gene3DG3DSA:3.30.160.602.7E-54972IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00325072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6355072IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM0035511092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4119149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.97E-6123148No hitNo description
SMARTSM00355230128155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVANKLGADS EIDPSILQHV VTPGTPLLAA DPDAEVVSLS PRTLLESDRY VCEICGQGFQ  60
RDQNLQMHRR RHKVPWKLLK REAGEAARKR VFVCPEPSCL HHNPSHALGD LVGIKKHFRR  120
KHSGQRQWAC ARCSKAYAVH SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCNAGR  180
ARADPSPACG AGSTGVAAAS AGSQPQAPPP MSLSRTASST SPSSDIVISP VAAWPGSSAP  240
TIPSPATAAF HRFEQVPSPR TPPSDHHHRG GHNLELQLMP PSGSGVVGRG APGVAEYGVA  300
PRTPAAPPQS HPATMQLQLS IGVCGGGGFG DEAMLAAARE KEEVEAREQL RQAVAEKAAA  360
NEARAQARRH AELAEQELAS AKRMRRQAQV ELSRAHALRE HAVRQVNATL LQITCLGCRH  420
KFRARPQLLD AALGAPEVTC SYMSSVVTEG GDAEADDEPP LDGRDGMLQR RRHAMAMDVI  480
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-18124178357Zinc finger protein JACKDAW
5b3h_F4e-18124178357Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.321220.0embryo| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141031
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141031_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0680520.0BT068052.1 Zea mays full-length cDNA clone ZM_BFb0036L04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460306.10.0protein indeterminate-domain 16
TrEMBLA0A1D6I5M10.0A0A1D6I5M1_MAIZE; Protein SHOOT GRAVITROPISM 5
STRINGGRMZM2G141031_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.15e-97indeterminate(ID)-domain 14