PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G140901_P01
Common NameLOC103654139, ZEAMMB73_610227, Zm.84421
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 298aa    MW: 32555.3 Da    PI: 6.6954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G140901_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51101391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppGfrF P+deelv++yL+ kv++++l  + + + evd++++ePw+Lp  +k ++++wyfFs rd+kyatg+r+nrat+sgyWkatgkd++
  GRMZM2G140901_P01  10 LPPGFRFYPSDEELVCHYLHGKVANEQLAGAGAaMVEVDLHTHEPWELPDVAKLSTNDWYFFSFRDRKYATGQRANRATRSGYWKATGKDRA 101
                        79*************************8776666***************87778999*********************************** PP

                NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  +  +vg++ktLvfy+grap+g+kt+Wvmhe+r+
  GRMZM2G140901_P01 102 IHDPrSAIVVGMRKTLVFYRGRAPNGVKTSWVMHEFRM 139
                        ***8455679**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-597159IPR003441NAC domain
PROSITE profilePS5100557.5510159IPR003441NAC domain
PfamPF023652.0E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHG KVANEQLAGA GAAMVEVDLH THEPWELPDV  60
AKLSTNDWYF FSFRDRKYAT GQRANRATRS GYWKATGKDR AIHDPRSAIV VGMRKTLVFY  120
RGRAPNGVKT SWVMHEFRMV EDPHAPPKED WVLCRVFYKT KADDATADSE QDAVRMPRGG  180
GGSADPSCYS PPPFPAALGG SHHHHHHLPP PPPSSDRRHG AGSPDDDFPG GMALLQHSSG  240
MFDFHGGQPR PHDGVVLAGP AAAAAAPASR DGGDQCGSGA LIDLGLDEHY TYNSLLQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-4711594165NO APICAL MERISTEM PROTEIN
1ut4_B6e-4711594165NO APICAL MERISTEM PROTEIN
1ut7_A6e-4711594165NO APICAL MERISTEM PROTEIN
1ut7_B6e-4711594165NO APICAL MERISTEM PROTEIN
3swm_A7e-4711597168NAC domain-containing protein 19
3swm_B7e-4711597168NAC domain-containing protein 19
3swm_C7e-4711597168NAC domain-containing protein 19
3swm_D7e-4711597168NAC domain-containing protein 19
3swp_A7e-4711597168NAC domain-containing protein 19
3swp_B7e-4711597168NAC domain-containing protein 19
3swp_C7e-4711597168NAC domain-containing protein 19
3swp_D7e-4711597168NAC domain-containing protein 19
4dul_A6e-4711594165NAC domain-containing protein 19
4dul_B6e-4711594165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.844210.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G140901
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G140901_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0849780.0BT084978.2 Zea mays full-length cDNA clone ZM_BFb0218P20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679189.10.0NAC domain-containing protein 79
SwissprotQ9FLR32e-58NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A3L6F8U30.0A0A3L6F8U3_MAIZE; NAC domain-containing protein 79
TrEMBLK7UK160.0K7UK16_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G140901_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]