PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G140669_P01
Common NameGATA3, LOC100284133
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 394aa    MW: 41925.8 Da    PI: 8.2292
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G140669_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19305339135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  GRMZM2G140669_P01 305 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 339
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.9E-6744377IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.47E-14298360No hitNo description
PROSITE profilePS5011412.242299335IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-18299353IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15303337IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.68E-15304361No hitNo description
PROSITE patternPS003440305330IPR000679Zinc finger, GATA-type
PfamPF003202.7E-17305339IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASFVVHHHG SPLDREGKVK MSALALRSSL RPCEAAEEVG AGQAWCRGAD MGIAAFADEF  60
SVEDLLDLED LCEVDKDCAE LGDTVPAAES VQEEDKVSSD SHGSSVLSYE LMTLPVPHPM  120
IDLPLPAHDA EELEWVSRIM DDSLAELPPP PKLPAAPLGA ARRPLEGAVA GPMRSPTTTI  180
CALSTEALVP VMRAKRSKRS RGSVWSLSGG APLSESTSSS STATTSSCSS SASFSPLLLL  240
PADPSLVLSS HLLDETPRPK KKSKHGKHGK SGKPKKRGRK PKHHPKPPQF SGGAAYAPAQ  300
GDRRCSHCGV QKTPQWRAGP EGAKTLCNAC GVRYKSGRLL PEYRPACSPT FVSSIHSNSH  360
RKVLEMRRKK DGDLGQLPLP VPAALLLGPA VESF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.205920.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G140669
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G140669_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279860.0KJ727986.1 Zea mays clone pUT6102 C2C2-GATA transcription factor (GATA3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357509.10.0uncharacterized protein LOC100284133
TrEMBLA0A060D1W50.0A0A060D1W5_MAIZE; C2C2-GATA transcription factor (Fragment)
STRINGGRMZM2G140669_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5