PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G140094_P01

Common Name

LOC103654329, ZEAMMB73_064763

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

GRAS

Protein Properties

Length: 487aa MW: 51456.3 Da PI: 6.6281

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G140094_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	228.2	3.9e-70	41	425	1	309
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevs 88 lv+ L cA +v++g e+a ++Lar l a+ +g p+qRla ++ ALa+rl+r + + ++ al ps++ + + aa+++f+e++ GRMZM2G140094_P01 41 LVQDLCGCAGHVEAGAVERAGRCLARATGLaAAAAGdGPLQRLAVPMADALARRLVRlMLPAVAGALiDPSDS--LDPRGVRAARRTFFELC 130 6899*********************99965666657***************7777777776334333..4677777899*** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 P+++ + +aN+aIlea+e+e+ vHi+Df q+ QW+ Ll+ ++ Rp+gpp+lR+T v++ +++ l ++ rL++ Aeel+vpf+ GRMZM2G140094_P01 131 PFPRAAVAVANRAILEAMENEKNVHIVDFAgpTAQPWQWLKLLHDFSRRPGGPPHLRLTIVHD----DRDLLAAISARLTEEAEELDVPFQV 218 *************************75579*************************....9******************** PP GRAS 179 nvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.................................................... 214 + v+ ++e+l++++L r+++gEa aV + lqlhrll GRMZM2G140094_P01 219 HR-VVGKIEALDPSDLhgvlRLRSGEARAVACTLQLHRLLavaddddhpagggatlsaghrssrtasvavsrlqrmastscppsdvddsgsp 309 .7999*****9976667888**************************************************************** PP GRAS 215 .................desvsleserdevLklv.kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikv 285 +++ +++ + ++L +v + l P vvvv+eqea h++ sF erf eal yy+a++d+l+a + + er+ v GRMZM2G140094_P01 310 atplgfvspppstppppQQQRQTPPALASFLAAVaRALAPAVVVVTEQEAGHGGVSFRERFGEALGYYAAVYDCLDAAAEAYRrpaAERAEV 401 ************9777777777889987478************************************877443333449* PP GRAS 286 Erellgreivnvvacegaerrerh 309 Er++lg+ei++v+ +ga+ r GRMZM2G140094_P01 402 ERAVLGEEIRDVLLRAGAHGAGRV 425 ************9999866655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.927	15	474	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-67	41	425	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MYTPTPPPSS SSSAMHHPVT TPAENDDDVP TCAPALWQER LVQDLCGCAG HVEAGAVERA 60 GRCLARATGL AAAAAGDGPL QRLAVPMADA LARRLVRLML PAVAGALIDP SDSLDPRGVR 120 AARRTFFELC PFPRAAVAVA NRAILEAMEN EKNVHIVDFA GPTAQPWQWL KLLHDFSRRP 180 GGPPHLRLTI VHDDRDLLAA ISARLTEEAE ELDVPFQVHR VVGKIEALDP SDLHGVLRLR 240 SGEARAVACT LQLHRLLAVA DDDDHPAGGG ATLSAGHRSS RTASVAVSRL QRMASTSCPP 300 SDVDDSGSPA TPLGFVSPPP STPPPPQQQR QTPPALASFL AAVARALAPA VVVVTEQEAG 360 HGGVSFRERF GEALGYYAAV YDCLDAAAEA YRRPAAERAE VERAVLGEEI RDVLLRAGAH 420 GAGRVQERGA ELRRDEGGER RAGQVRPQRV RGDGEQGAGR LPALVLELVA TLLGVGVAAG 480 RIRLVGS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MYTPTPPPSS SSSAMHHPVT TPAENDDDVP TCAPALWQER LVQDLCGCAG HVEAGAVERA  60
GRCLARATGL AAAAAGDGPL QRLAVPMADA LARRLVRLML PAVAGALIDP SDSLDPRGVR  120
AARRTFFELC PFPRAAVAVA NRAILEAMEN EKNVHIVDFA GPTAQPWQWL KLLHDFSRRP  180
GGPPHLRLTI VHDDRDLLAA ISARLTEEAE ELDVPFQVHR VVGKIEALDP SDLHGVLRLR  240
SGEARAVACT LQLHRLLAVA DDDDHPAGGG ATLSAGHRSS RTASVAVSRL QRMASTSCPP  300
SDVDDSGSPA TPLGFVSPPP STPPPPQQQR QTPPALASFL AAVARALAPA VVVVTEQEAG  360
HGGVSFRERF GEALGYYAAV YDCLDAAAEA YRRPAAERAE VERAVLGEEI RDVLLRAGAH  420
GAGRVQERGA ELRRDEGGER RAGQVRPQRV RGDGEQGAGR LPALVLELVA TLLGVGVAAG  480
RIRLVGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-17	48	265	26	233	Protein SCARECROW
5b3h_A	2e-17	48	265	25	232	Protein SCARECROW
5b3h_D	2e-17	48	265	25	232	Protein SCARECROW
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Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G140094

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G140094_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008679396.1	0.0	scarecrow-like protein 3
TrEMBL	K7V297	0.0	K7V297_MAIZE; Scarecrow-like protein 3
STRING	GRMZM2G140094_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176
Representative plant	OGRP15426	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	9e-38	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	GRMZM2G140094_P01
Entrez Gene	103654329