PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G140085_P02
Common NameLOC100501406, ZEAMMB73_494906
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 320aa    MW: 34449.2 Da    PI: 7.6882
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G140085_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS185.44e-571274129374
               GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.. 214
                        ++a+  Rp+g+p+lRiT v++    ++  l +t+  L++ Ae+l++ f+f++ v  rle+l+l +L    ++++g+a a +++lq+hrll  
  GRMZM2G140085_P02   1 MRAFHGRPGGAPQLRITMVHD----DEAFLAHTAALLRREAEALDMAFSFHP-VLGRLETLDLGDLhhalAMRSGDARAFSCALQMHRLLav 87 
                        8999*****************....9**************************.689999999887733336677****************** PP

               GRAS 215 ...........................desvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpre 278
                                                     + +l  +   +L++ +  sPkvv v+eq+a    ++ +++rf eal++y+a+f++l+  ++++
  GRMZM2G140085_P02  88 ddtdtqqqlaaaaasssssphpqwtavP-RPALLPPLAGFLSAARAASPKVVCVMEQDAGDnVAGGLAARFEEALQHYAAVFEALDDAAGAA 178
                        *********************9988643.3333336889*******************98835779*******************9999*** PP

               GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                         eer+ vEr+ll +e+++v+a  g errerhe+l++W +r+  aGF  vpls+ a ++a++ lr+++ +gy+     g+l+l+ ++rpL+sv
  GRMZM2G140085_P02 179 GEERAAVERVLLWEEVRDVLARDGPERRERHERLHQWAARMAGAGFAGVPLSYVAKMEADAALRRCGLRGYETRGVGGCLLLCRRGRPLYSV 270
                        ******************************************************************************************** PP

               GRAS 371 SaWr 374
                        SaWr
  GRMZM2G140085_P02 271 SAWR 274
                        ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.4E-541274IPR005202Transcription factor GRAS
PROSITE profilePS5098528.911254IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020127anatomyprimary root
PO:0001052developmental stagevascular leaf expansion stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRAFHGRPGG APQLRITMVH DDEAFLAHTA ALLRREAEAL DMAFSFHPVL GRLETLDLGD  60
LHHALAMRSG DARAFSCALQ MHRLLAVDDT DTQQQLAAAA ASSSSSPHPQ WTAVPRPALL  120
PPLAGFLSAA RAASPKVVCV MEQDAGDNVA GGLAARFEEA LQHYAAVFEA LDDAAGAAGE  180
ERAAVERVLL WEEVRDVLAR DGPERRERHE RLHQWAARMA GAGFAGVPLS YVAKMEADAA  240
LRRCGLRGYE TRGVGGCLLL CRRGRPLYSV SAWRPWPSRG SASASSSGSG SRSSRLPQLV  300
AAPVQMPWPL LLPPPVYHTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-204275147380Protein SCARECROW
5b3h_A3e-204275146379Protein SCARECROW
5b3h_D3e-204275146379Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G140085
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G140085_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852350.0BT085235.2 Zea mays full-length cDNA clone ZM_BFb0338F06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183060.10.0uncharacterized protein LOC100501406
TrEMBLA0A1D6QHE21e-178A0A1D6QHE2_MAIZE; Scarecrow-like protein 3
TrEMBLC4J3381e-179C4J338_MAIZE; Uncharacterized protein
STRINGGRMZM2G140085_P011e-180(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-26scarecrow-like 3