PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G140085_P01
Common NameLOC100501406, ZEAMMB73_494906
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 369aa    MW: 39334.6 Da    PI: 7.342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G140085_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS183.31.7e-561323129374
               GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.. 214
                        ++a+  Rp+g+p+lRiT v++    ++  l +t+  L++ Ae+l++ f+f++ v  rle+l+l +L    ++++g+a a +++lq+hrll  
  GRMZM2G140085_P01   1 MRAFHGRPGGAPQLRITMVHD----DEAFLAHTAALLRREAEALDMAFSFHP-VLGRLETLDLGDLhhalAMRSGDARAFSCALQMHRLLav 87 
                        8999*****************....9**************************.689999999887733336677****************** PP

               GRAS 215 ............................................................................desvsleserdevLkl 230
                                                                                                      + +l  +   +L++
  GRMZM2G140085_P01  88 ddtdtqqqlaaaavgtgpsvgpraasscscyppgdvacyycppetaktslpdpspttpfaaqasssssphpqwtavP-RPALLPPLAGFLSA 178
                        **********************************************************************9988643.3333336889**** PP

               GRAS 231 vkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                         +  sPkvv v+eq+a    ++ +++rf eal++y+a+f++l+  ++++ eer+ vEr+ll +e+++v+a  g errerhe+l++W +r+  
  GRMZM2G140085_P01 179 ARAASPKVVCVMEQDAGDnVAGGLAARFEEALQHYAAVFEALDDAAGAAGEERAAVERVLLWEEVRDVLARDGPERRERHERLHQWAARMAG 270
                        ***************98835779*******************9999********************************************** PP

               GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        aGF  vpls+ a ++a++ lr+++ +gy+     g+l+l+ ++rpL+svSaWr
  GRMZM2G140085_P01 271 AGFAGVPLSYVAKMEADAALRRCGLRGYETRGVGGCLLLCRRGRPLYSVSAWR 323
                        ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.821303IPR005202Transcription factor GRAS
PfamPF035146.0E-541323IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MRAFHGRPGG APQLRITMVH DDEAFLAHTA ALLRREAEAL DMAFSFHPVL GRLETLDLGD  60
LHHALAMRSG DARAFSCALQ MHRLLAVDDT DTQQQLAAAA VGTGPSVGPR AASSCSCYPP  120
GDVACYYCPP ETAKTSLPDP SPTTPFAAQA SSSSSPHPQW TAVPRPALLP PLAGFLSAAR  180
AASPKVVCVM EQDAGDNVAG GLAARFEEAL QHYAAVFEAL DDAAGAAGEE RAAVERVLLW  240
EEVRDVLARD GPERRERHER LHQWAARMAG AGFAGVPLSY VAKMEADAAL RRCGLRGYET  300
RGVGGCLLLC RRGRPLYSVS AWRPWPSRGS ASASSSGSGS RSSRLPQLVA APVQMPWPLL  360
LPPPVYHTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-17183324242380Protein SCARECROW
5b3h_A7e-17183324241379Protein SCARECROW
5b3h_D7e-17183324241379Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G140085
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G140085_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852350.0BT085235.2 Zea mays full-length cDNA clone ZM_BFb0338F06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183060.10.0uncharacterized protein LOC100501406
TrEMBLA0A1D6QHE20.0A0A1D6QHE2_MAIZE; Scarecrow-like protein 3
TrEMBLC4J3380.0C4J338_MAIZE; Uncharacterized protein
STRINGGRMZM2G140085_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-19scarecrow-like 3