PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G140033_P01
Common NameLOC103643080, LOC103655697, ZEAMMB73_117114, ZEAMMB73_689249, Zm.92843
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 330aa    MW: 34434.8 Da    PI: 8.3016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G140033_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055131153123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+k+F++   L  H  +H
  GRMZM2G140033_P01 131 YECKTCNKCFPTFQALGGHRASH 153
                        99**********99999998887 PP
2zf-C2H211.80.00075231253123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  F +   L  H+r+H
  GRMZM2G140033_P01 231 HECSICGAEFASGQALGGHMRRH 253
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.43E-8130153No hitNo description
PfamPF139121.9E-11130155IPR007087Zinc finger, C2H2
SMARTSM003550.094131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576674.43E-8226253No hitNo description
PfamPF139122.6E-12230254IPR007087Zinc finger, C2H2
SMARTSM003550.016231253IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64231258IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MQTSSEVVTT KKRIATTTLL MTPTPTSSST DDHSSTAVIK RKQRTKRPRP SAPASSSEST  60
TTEEEEDMAH CLILLAAGAA HASDPSPALL PSSTAPHQSQ APPPRAERYT SRKYTEAAAT  120
PDGVRAGFYV YECKTCNKCF PTFQALGGHR ASHKKPRLAA VNVDGTTTTT TATTMTASPS  180
PPPPLAIAVQ PPPPPRQTTP IEFPDVAVAT ALSLSSSSSV AAAASGKPRA HECSICGAEF  240
ASGQALGGHM RRHRPLNAPD RAVTVATGNS NSKKEGINLE LDLNLPAPSD EEAVVSLLPP  300
PAVMLGLGQF NDGSKAGHML TASALVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KRPRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G140033
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G140033_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039892e-62AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040262e-62AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149582e-62AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-62CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664471.10.0zinc finger protein ZAT5
TrEMBLK7TDX60.0K7TDX6_MAIZE; C2H2-type zinc finger family protein
STRINGGRMZM2G038291_P010.0(Zea mays)
STRINGGRMZM2G140033_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-37C2H2 family protein