PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G140016_P01
Common NameZEAMMB73_845457, Zm.149133
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 320aa    MW: 36510.9 Da    PI: 8.4735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G140016_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056791123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       y C+  +Cgk F ++s LkrH   H
  GRMZM2G140016_P01 67 YICHyeNCGKKFLDSSKLKRHFLIH 91
                       89*******************8877 PP
2zf-C2H2219.1e-0797121123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cg+ Fs   nLk H++tH
  GRMZM2G140016_P01  97 FVCPheGCGRAFSLDFNLKAHMKTH 121
                        89**********************9 PP
3zf-C2H219.33e-06127152123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+   Cg++F++ s L+ Hir  H
  GRMZM2G140016_P01 127 HVCQypECGRRFTQESKLRAHIRAqH 152
                        689999*****************888 PP
4zf-C2H215.74.3e-05191216123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y+Cp   C+k + + + L+ H+++ H
  GRMZM2G140016_P01 191 YVCPydGCDKAYIHEYKLNLHLKKeH 216
                        9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.7E-44664IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-85595No hitNo description
Gene3DG3DSA:3.30.160.606.5E-146587IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0136791IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.0666796IPR007087Zinc finger, C2H2
PROSITE patternPS0002806991IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-1282122No hitNo description
Gene3DG3DSA:3.30.160.601.3E-1988124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.5E-497121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.13397126IPR007087Zinc finger, C2H2
PROSITE patternPS00028099121IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-10107153No hitNo description
Gene3DG3DSA:3.30.160.603.3E-8126149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.697127156IPR007087Zinc finger, C2H2
SMARTSM003550.0047127152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-9183213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.68E-6186214No hitNo description
PROSITE profilePS501578.891191221IPR007087Zinc finger, C2H2
SMARTSM003550.0024191216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRPPPPEMHI TRRRYRWVKE WVPQDLVVTG GPCTLYKWVR ATKDVGRHFF DVGALKKHAH  60
VHGERQYICH YENCGKKFLD SSKLKRHFLI HTGEKNFVCP HEGCGRAFSL DFNLKAHMKT  120
HSADNYHVCQ YPECGRRFTQ ESKLRAHIRA QHEKNPGASS MNHSAIGGPH QPPRPAKVSA  180
APPAPSAERP YVCPYDGCDK AYIHEYKLNL HLKKEHPNHY QDGGPNGAAA PSKRSISKSS  240
HRSKLDITSR MPPANIPKHR GYATPLPAVV SLPEEQQLLR KVVYEDDSEE TEEEGDNNGE  300
DRWNYKRAAS SDDEETEDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-293914811118PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.5880.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G140016
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G140016_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1423220.0AF142322.1 Zea mays putative transcription repressor maize TRM protein (trm) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408184.10.0yin-yang1 isoform X2
SwissprotQ2V3L36e-84YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A3L6EWZ30.0A0A3L6EWZ3_MAIZE; Putative zinc finger protein
STRINGGRMZM2G140016_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.18e-78C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]