PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139765_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 449aa    MW: 48039.8 Da    PI: 9.4797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139765_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19207257256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  GRMZM2G139765_P01 207 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 257
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-31206266No hitNo description
PROSITE profilePS5103223.024207264IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23207265IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-32207265IPR001471AP2/ERF domain
SMARTSM003801.1E-38207270IPR001471AP2/ERF domain
PfamPF008472.6E-12208257IPR001471AP2/ERF domain
PRINTSPR003677.9E-11208219IPR001471AP2/ERF domain
PRINTSPR003677.9E-11230246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEPMGRDGGG GHGRGWKGKG VSSGSAAGRQ LAPVLEDAPA AALLRPLKKI RSPDRRLNRS  60
LSALSSSAPP SPDSSSVSNP MSPPSTRHIF PFAYDPAPAA STSTAASPRL LPLLQYGSVF  120
QQPLPPQQPL QHQQMISFGS RQQQFGAAAA PLFPPQLVAP PEVQQQMLLL RYWSEALNLS  180
PRGFRAGAGA GAVPPALYQQ LLRAPKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA  240
EDAAMAYDRE AFKLRGENAK LNFPDLFLGK GRVGGSGRTS ASAAVSCSSS SSSAPPTPDE  300
NHAKQAQRHD GEQPCNSEAK PLFPEAEQPN NLEHEPNSQL QSADHHGGDG STVMFQPSVA  360
SSGMWGPAEE AWFSAWGPGS SVWDYDMDNA HGLFLQSRFA SEAASMDYVS SMPEAPATPA  420
AGTAVASAAS LSSPPPLPLP RSPTYRWKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20206264463ATERF1
3gcc_A9e-20206264463ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139765
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139765_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276740.0KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645977.20.0ethylene-responsive transcription factor ERF053
TrEMBLA0A1D6HEC70.0A0A1D6HEC7_MAIZE; Ethylene-responsive transcription factor ERF053
STRINGGRMZM2G139765_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-37ERF family protein