PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139688_P01
Common NameLOC100191731
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 559aa    MW: 60396 Da    PI: 4.747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139688_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-154996148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT  Ed +lvd+vk+ G g+W+++ +  g+ R++k+c++rw ++l
  GRMZM2G139688_P01 49 KGPWTSAEDAILVDYVKKNGEGNWNAVQKNTGLFRCGKSCRLRWANHL 96
                       79******************************************9986 PP
2Myb_DNA-binding51.62.2e-16102145146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++T+eE+ l++++++++G++ W++ a +++ gRt++++k++w++
  GRMZM2G139688_P01 102 KGAFTPEEERLIIQLHAKMGNK-WARMAGHLP-GRTDNEIKNYWNT 145
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4444496IPR017930Myb domain
SuperFamilySSF466893.44E-3046143IPR009057Homeodomain-like
SMARTSM007172.5E-134898IPR001005SANT/Myb domain
PfamPF002499.9E-144996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2250103IPR009057Homeodomain-like
CDDcd001673.45E-105196No hitNo description
PROSITE profilePS5129425.18797151IPR017930Myb domain
SMARTSM007179.5E-17101149IPR001005SANT/Myb domain
PfamPF002492.7E-15102145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-26104149IPR009057Homeodomain-like
CDDcd001672.75E-12104145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MYRVKSEGEG EGEGDCEMML QEQMDSLVAD DVSSGGGSPH RGVGTPLKKG PWTSAEDAIL  60
VDYVKKNGEG NWNAVQKNTG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIIQLHAKM  120
GNKWARMAGH LPGRTDNEIK NYWNTRIKRC QRASLPIYPA SVCNQSTNED QQLSGNFNGG  180
ENISNDLLSG NSLYLPDFTS DNFIANPEAL SYAPQLSAVS ISNLLGQSFA SKSCSFMDQV  240
DQAGMLKQSG CVLPALSDAI DSVLSSADHF SNDSEKLRQA LGFDYLNEAN ASSKSIAPFG  300
VALTGSHAFL NGNFSASRPT NGPLKMELPS LQDTESDPNS WLKYTVAPAM QPTELVDPYL  360
QSPSATPSVK SECASPRNSG LLEELLHEAQ ALRSGKNQQS SVRSSSSSAG TPYETTTVVS  420
PEFDMGQEYW EEQPSSFLSE YAHFSGNSFT ESTPPVSAAS PDIFQLSKIS PAQSPSMGSG  480
EQALEPKHES AASPRPENLR PDALFSGNTA DPSIFNNAIA MLLGNGIDAE YKPVLGDGIV  540
LDSSSWNNMQ HAFQMAGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31441491106B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.249970.0endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139688
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139688_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339250.0BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds.
GenBankBT0626920.0BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds.
GenBankBT0638280.0BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130632.10.0MYBGA transcription factor
RefseqXP_008672038.10.0MYBGA transcription factor isoform X1
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A3L6FKU60.0A0A3L6FKU6_MAIZE; Transcription factor GAMYB
TrEMBLB4F9Y70.0B4F9Y7_MAIZE; GAMYB transcription factor
STRINGGRMZM2G139688_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.19e-81myb domain protein 65
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]