PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G139535_P01 | ||||||||
Common Name | HSF21, LOC100283948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 298aa MW: 32258.3 Da PI: 10.1326 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 102.8 | 3.1e-32 | 20 | 112 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+++++e++ ++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv ++ weF++++F++g++ l GRMZM2G139535_P01 20 FLTKTHQMVEERGTDEVISWAEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANDNFRRGEQGL 102 9*****************************************************************99.........*************** PP XXXXXXXXXX CS HSF_DNA-bind 94 lekikrkkse 103 l+ i+r+ks+ GRMZM2G139535_P01 103 LSGIRRRKST 112 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.2E-35 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.0E-53 | 16 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.86E-31 | 16 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.8E-17 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.9E-28 | 20 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-17 | 58 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 59 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-17 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGEAAAAVAA SKRGGGPAPF LTKTHQMVEE RGTDEVISWA EQGRSFVVWK PVELARDLLP 60 LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANDNFRRGEQ GLLSGIRRRK STALQMSKSG 120 SGGSGGVNAT FPPPLPPPPP ASATTSGVHE RSSSSASSPP RAPDLASENE QLKKDNHTLS 180 AELAQARRHC EELLGFLSRF LDVRQLDLRL LMQEDVRAGA SDDGAQRRAH AVASQLERGG 240 GEEGKSVKLF GVLLKDAARK RGRCEEAAAS ERPIKMIRVG EPWVGVPSSG PGRCGGEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 3e-20 | 20 | 113 | 5 | 109 | Heat shock factor protein 2 |
5d8l_B | 3e-20 | 20 | 113 | 5 | 109 | Heat shock factor protein 2 |
5d8l_D | 3e-20 | 20 | 113 | 5 | 109 | Heat shock factor protein 2 |
5d8l_F | 3e-20 | 20 | 113 | 5 | 109 | Heat shock factor protein 2 |
5d8l_H | 3e-20 | 20 | 113 | 5 | 109 | Heat shock factor protein 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.10032 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G139535 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G139535_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727754 | 0.0 | KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150318.1 | 0.0 | uncharacterized protein LOC100283948 | ||||
Swissprot | Q67TP9 | 1e-131 | HSFB1_ORYSJ; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A060D1R4 | 0.0 | A0A060D1R4_MAIZE; HSF transcription factor (Fragment) | ||||
STRING | GRMZM2G139535_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 3e-56 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G139535_P01 |
Publications ? help Back to Top | |||
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