PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139372_P07
Common NameLOC100274330, ZEAMMB73_583232
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 625aa    MW: 65888.4 Da    PI: 4.2594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139372_P07genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12366409755
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        e+Er+RR+++N+++ +Lr+l+P+ +      K++ a+iL  A++YI  Lq
  GRMZM2G139372_P07 366 EAERKRRKKLNERLYKLRSLVPNiS------KMDRAAILGDAIDYIVGLQ 409
                        89*********************66......***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-17357420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-16365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-10366409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.58E-13366413No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15366420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020126anatomytassel inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MTSAGDPISI LIPDTQARPR NPRACMLPAD AYLRFVFMAA AAYCCECDVQ AAAGTVLQSS  60
GEAIVAGAMG GGVHHHHPCV AADGDGAGAG PGPASVEAAL RPLVGVDAWD YCVYWRLSPD  120
QRFLEMAGFC CSSQFEAQLP ALGDLPPSIQ LDSSSAGMHA EAMVSNQPIW QSSRVPELQT  180
GYSSGMVQEP GSSGGPRTRL LVPVAGGLVE LFAARYMAEE EQMAELVMAQ CGVPSGGEGG  240
AWPPGFAWDG GASDASRGMY GDAVPPSLSL FDAAGSVAAD PFQAVQQAPG AGGGGVDDVA  300
GWQYAAAAGS ELEAVQLQQE QQPRDADSGS EVSDMQGDPE DDGDGDAQGR GGGKGGGKRQ  360
QCKNLEAERK RRKKLNERLY KLRSLVPNIS KMDRAAILGD AIDYIVGLQN QVKALQDELE  420
DPADGAGAPD VLLDHPPPAS LVGLENDESP PTSHQHPLAG TKRARAAAEE EEEEKGNDME  480
PQVEVRQVEA NEFFLQMLCE RRPGRFVQIM DSIADLGLEV TNVNVTSHES LVLNVFRAAR  540
RDNEVAVQAD RLRDSLLEVM REPYGVWSSS APPVGMSGSG IADVKHDSVD MKLDGIIDGQ  600
AAPSVAVGVS EDHYGGYNHL LQYLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-15357418263Transcription factor MYC2
5gnj_B6e-15357418263Transcription factor MYC2
5gnj_E6e-15357418263Transcription factor MYC2
5gnj_F6e-15357418263Transcription factor MYC2
5gnj_G6e-15357418263Transcription factor MYC2
5gnj_I6e-15357418263Transcription factor MYC2
5gnj_M6e-15357418263Transcription factor MYC2
5gnj_N6e-15357418263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349357RGGGKGGGK
2367374ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.428970.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139372
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139372_P07
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0677850.0BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406977.10.0putative HLH DNA-binding domain superfamily protein isoform X1
SwissprotQ6YUS31e-163TDR_ORYSJ; Transcription factor TDR
TrEMBLC0PHL60.0C0PHL6_MAIZE; Transcription factor ABORTED MICROSPORES
STRINGGRMZM2G139372_P070.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-36bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]