PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G139372_P05 | ||||||||
Common Name | LOC100274330, ZEAMMB73_583232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 440aa MW: 46650.7 Da PI: 4.2287 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.3e-12 | 181 | 224 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N+++ +Lr+l+P+ + K++ a+iL A++YI Lq GRMZM2G139372_P05 181 EAERKRRKKLNERLYKLRSLVPNiS------KMDRAAILGDAIDYIVGLQ 224 89*********************66......***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.11E-17 | 172 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.77 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-16 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.21E-13 | 181 | 228 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-16 | 181 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-10 | 181 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MVQEPGSSGG PRTRLLVPVA GGLVELFAAR YMAEEEQMAE LVMAQCGVPS GGEGGAWPPG 60 FAWDGGASDA SRGMYGDAVP PSLSLFDAAG SVAADPFQAV QQAPGAGGGG VDDVAGWQYA 120 AAAGSELEAV QLQQEQQPRD ADSGSEVSDM QGDPEDDGDG DAQGRGGGKG GGKRQQCKNL 180 EAERKRRKKL NERLYKLRSL VPNISKMDRA AILGDAIDYI VGLQNQVKAL QDELEDPADG 240 AGAPDVLLDH PPPASLVGLE NDESPPTSHQ HPLAGTKRAR AAAEEEEEEK GNDMEPQVEV 300 RQVEANEFFL QMLCERRPGR FVQIMDSIAD LGLEVTNVNV TSHESLVLNV FRAARRDNEV 360 AVQADRLRDS LLEVMREPYG VWSSSAPPVG MSGSGIADVK HDSVDMKLDG IIDGQAAPSV 420 AVGVSEDHYG GYNHLLQYLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 172 | 227 | 2 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 172 | RGGGKGGGK |
2 | 182 | 189 | ERKRRKKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.42897 | 0.0 | pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G139372 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G139372_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042791 | 0.0 | BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds. | |||
GenBank | BT067785 | 0.0 | BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds. | |||
GenBank | BT068836 | 0.0 | BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds. | |||
GenBank | BT088090 | 0.0 | BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds. | |||
GenBank | BT088299 | 0.0 | BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020406977.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
Swissprot | Q6YUS3 | 1e-118 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | C0PHL6 | 0.0 | C0PHL6_MAIZE; Transcription factor ABORTED MICROSPORES | ||||
STRING | GRMZM2G139372_P07 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G139372_P05 |