PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139372_P04
Common NameLOC100274330, ZEAMMB73_583232
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 526aa    MW: 55728.8 Da    PI: 4.1847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139372_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12267310755
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        e+Er+RR+++N+++ +Lr+l+P+ +      K++ a+iL  A++YI  Lq
  GRMZM2G139372_P04 267 EAERKRRKKLNERLYKLRSLVPNiS------KMDRAAILGDAIDYIVGLQ 310
                        89*********************66......***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-17258321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-16266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-13267314No hitNo description
PfamPF000107.1E-10267310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-16267321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MELGNQNQAN ACDGVCVPQT ACRFLEMAGF CCSSQFEAQL PALGDLPPSI QLDSSSAGMH  60
AEAMVSNQPI WQSSRVPELQ TGYSSGMVQE PGSSGGPRTR LLVPVAGGLV ELFAARYMAE  120
EEQMAELVMA QCGVPSGGEG GAWPPGFAWD GGASDASRGM YGDAVPPSLS LFDAAGSVAA  180
DPFQAVQQAP GAGGGGVDDV AGWQYAAAAG SELEAVQLQQ EQQPRDADSG SEVSDMQGDP  240
EDDGDGDAQG RGGGKGGGKR QQCKNLEAER KRRKKLNERL YKLRSLVPNI SKMDRAAILG  300
DAIDYIVGLQ NQVKALQDEL EDPADGAGAP DVLLDHPPPA SLVGLENDES PPTSHQHPLA  360
GTKRARAAAE EEEEEKGNDM EPQVEVRQVE ANEFFLQMLC ERRPGRFVQI MDSIADLGLE  420
VTNVNVTSHE SLVLNVFRAA RRDNEVAVQA DRLRDSLLEV MREPYGVWSS SAPPVGMSGS  480
GIADVKHDSV DMKLDGIIDG QAAPSVAVGV SEDHYGGYNH LLQYLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14258319263Transcription factor MYC2
5gnj_B3e-14258319263Transcription factor MYC2
5gnj_E3e-14258319263Transcription factor MYC2
5gnj_F3e-14258319263Transcription factor MYC2
5gnj_G3e-14258319263Transcription factor MYC2
5gnj_I3e-14258319263Transcription factor MYC2
5gnj_M3e-14258319263Transcription factor MYC2
5gnj_N3e-14258319263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250258RGGGKGGGK
2268275ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.428970.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139372
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139372_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0427910.0BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
GenBankBT0677850.0BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBankBT0688360.0BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBankBT0880900.0BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBankBT0882990.0BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334803.10.0uncharacterized protein LOC100274330
SwissprotQ6YUS31e-144TDR_ORYSJ; Transcription factor TDR
TrEMBLC0PKL70.0C0PKL7_MAIZE; Transcription factor ABORTED MICROSPORES
STRINGGRMZM2G139372_P070.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-36bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]