PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G139372_P03 | ||||||||
Common Name | LOC100274330, ZEAMMB73_583232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 594aa MW: 62614.3 Da PI: 4.2265 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.4e-12 | 335 | 378 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N+++ +Lr+l+P+ + K++ a+iL A++YI Lq GRMZM2G139372_P03 335 EAERKRRKKLNERLYKLRSLVPNiS------KMDRAAILGDAIDYIVGLQ 378 89*********************66......***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-17 | 326 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.77 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-16 | 334 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 335 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.01E-13 | 335 | 382 | No hit | No description |
Pfam | PF00010 | 8.3E-10 | 335 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MSSDVNCDDI RDAERAHEQA AAGTVLQSSG EAIVAGAMGG GVHHHHPCVA ADGDGAGAGP 60 GPASVEAALR PLVGVDAWDY CVYWRLSPDQ RFLEMAGFCC SSQFEAQLPA LGDLPPSIQL 120 DSSSAGMHAE AMVSNQPIWQ SSRVPELQTG YSSGMVQEPG SSGGPRTRLL VPVAGGLVEL 180 FAARYMAEEE QMAELVMAQC GVPSGGEGGA WPPGFAWDGG ASDASRGMYG DAVPPSLSLF 240 DAAGSVAADP FQAVQQAPGA GGGGVDDVAG WQYAAAAGSE LEAVQLQQEQ QPRDADSGSE 300 VSDMQGDPED DGDGDAQGRG GGKGGGKRQQ CKNLEAERKR RKKLNERLYK LRSLVPNISK 360 MDRAAILGDA IDYIVGLQNQ VKALQDELED PADGAGAPDV LLDHPPPASL VGLENDESPP 420 TSHQHPLAGT KRARAAAEEE EEEKGNDMEP QVEVRQVEAN EFFLQMLCER RPGRFVQIMD 480 SIADLGLEVT NVNVTSHESL VLNVFRAARR DNEVAVQADR LRDSLLEVMR EPYGVWSSSA 540 PPVGMSGSGI ADVKHDSVDM KLDGIIDGQA APSVAVGVSE DHYGGYNHLL QYLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 326 | 387 | 2 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 318 | 326 | RGGGKGGGK |
2 | 336 | 343 | ERKRRKKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.42897 | 0.0 | pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G139372 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G139372_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068836 | 0.0 | BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds. | |||
GenBank | BT088299 | 0.0 | BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001334803.1 | 0.0 | uncharacterized protein LOC100274330 | ||||
Swissprot | Q6YUS3 | 1e-164 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | C0PKL7 | 0.0 | C0PKL7_MAIZE; Transcription factor ABORTED MICROSPORES | ||||
STRING | GRMZM2G139372_P07 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G139372_P03 |
Entrez Gene | 100274330 |