PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139369_P01
Common NameLOC100383238, ZEAMMB73_177749, Zm.21280
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-X1
Protein Properties Length: 908aa    MW: 99369.8 Da    PI: 8.4072
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139369_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.6e-06424443120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+H C++ C+ G+CppC++
  GRMZM2G139369_P01 424 CGRHACKRRCCAGDCPPCSE 443
                        ******************85 PP
2zf-NF-X120.78.7e-07451470120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+HkC ++CH+G C pCp+
  GRMZM2G139369_P01 451 CGNHKCLSPCHRGACSPCPL 470
                        ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.83E-5108167No hitNo description
PROSITE patternPS013590109161IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.55109162IPR001841Zinc finger, RING-type
SMARTSM004380.008211229IPR000967Zinc finger, NF-X1-type
PfamPF014220.01212228IPR000967Zinc finger, NF-X1-type
CDDcd060086.23E-8254302No hitNo description
SMARTSM004380.017264283IPR000967Zinc finger, NF-X1-type
PfamPF014220.0053264281IPR000967Zinc finger, NF-X1-type
CDDcd060081.65E-7307351No hitNo description
SMARTSM004380.0054317336IPR000967Zinc finger, NF-X1-type
PfamPF014220.16317335IPR000967Zinc finger, NF-X1-type
CDDcd060084.39E-9361410No hitNo description
SMARTSM004380.066371391IPR000967Zinc finger, NF-X1-type
PfamPF014220.0017371390IPR000967Zinc finger, NF-X1-type
CDDcd060083.92E-9414462No hitNo description
SMARTSM004380.0069424443IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015424442IPR000967Zinc finger, NF-X1-type
CDDcd060081.42E-10441489No hitNo description
SMARTSM004380.0083451470IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-5451469IPR000967Zinc finger, NF-X1-type
SMARTSM0043825514529IPR000967Zinc finger, NF-X1-type
PfamPF0142236518528IPR000967Zinc finger, NF-X1-type
SMARTSM00438190537582IPR000967Zinc finger, NF-X1-type
PfamPF0142216537546IPR000967Zinc finger, NF-X1-type
SMARTSM0043811619658IPR000967Zinc finger, NF-X1-type
PfamPF014220.53619629IPR000967Zinc finger, NF-X1-type
SMARTSM004380.22671689IPR000967Zinc finger, NF-X1-type
PfamPF0142235671688IPR000967Zinc finger, NF-X1-type
SMARTSM004380.79734755IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MPSSYAAAAA GSSSRKPNRT SSAAAPTLRP PAPSPSPAPA PLAVNPSVIS DSDPSSYSSS  60
SADEADFAAS DSATASVVSA YLSVAGEGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSSSCF AILHLPCIQS WAHQSASGPA VPCPTWGCPK CRFAYPKSEI PSSYVCFCSK  180
TIDPAPDPWI LPHSCGDVCG RRLDANLDSG CEHTCLLLCH PGPCPPCPAV VPKATCFCGV  240
HREPRRCAHQ RYSCGGKCNK RLSCGLHHCP VDCHDGPCPP CAVLGSHKCE CGEILEEKLC  300
SERIFQCKRE CGGMLDCGKH KCERGCHGGK CGECPLRGRR TCPCGKKNYP RLECDAEAAT  360
CGSTCEKVLG CGRHRCPERC HRGPCDGTCR LVVTKACRCG GLKKEVPCYQ ELTCERKCQR  420
LRNCGRHACK RRCCAGDCPP CSETCDKKLR CGNHKCLSPC HRGACSPCPL MKTISCACGK  480
TCFEVPCGTE KNQKPPKCSK KCNIPRLCRH KLECRPHKCH YGACPPCKLI CGEEFPCGHT  540
CKERCHGPIS PPNSEFTLKP TKKKMGKHIE CTPGTPCPPC KEVVLVSCFG QHLGQERTMP  600
CCKWRPFPCE NLCGNPLLCG NHYCTKSCHV LEVPLNHPEG DRTTSISKVN ALAMPCEQCN  660
LPCQRVREPP CSHPCPLPCH LNDCPSCKVL VKRPCHCGAM VHAFECVFYN NLNAKDQIKI  720
RSCGGPCHRK LPNCPHLCSE VCHPGVCPSV DQCMKKVNTR CACSTLKQEW RCQDVLKEYR  780
KSGRDPKEVP KSQFGVGLLA CGEDCKKKLK APDSELHLRK SQENKIPAVE VVNAPKRRKR  840
RDRGQEVKIS KFQEVKTFVL RALLIILLSI IVAAGLYLLW KGIFWLSDWM NEMEEQRASQ  900
RYPRGAML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834840PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.212800.0endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139369
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139369_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666630.0BT066663.1 Zea mays full-length cDNA clone ZM_BFb0042A15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169371.10.0uncharacterized protein LOC100383238
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLC0PEE40.0C0PEE4_MAIZE; Sequence-specific DNA binding transcription factor
STRINGGRMZM2G139369_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors