PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139082_P02
Common NameEREB152, hscf1, ZEAMMB73_461399, Zm.123
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 300aa    MW: 32850.2 Da    PI: 8.9381
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139082_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-15139198155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GRMZM2G139082_P02 139 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 198
                        57*******************666664477446*************************98 PP
2AP234.74.4e-11241282145
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa++
  GRMZM2G139082_P02 241 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAARR 282
                        57****************988532...5**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.65E-21139208No hitNo description
SuperFamilySSF541715.36E-18139208IPR016177DNA-binding domain
PfamPF008471.3E-12139198IPR001471AP2/ERF domain
PROSITE profilePS5103219.23140206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16140207IPR001471AP2/ERF domain
SMARTSM003804.6E-30140212IPR001471AP2/ERF domain
PRINTSPR003672.6E-5141152IPR001471AP2/ERF domain
PRINTSPR003672.6E-5188208IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-9241281IPR016177DNA-binding domain
PfamPF008473.9E-7241282IPR001471AP2/ERF domain
CDDcd000183.73E-12241281No hitNo description
PROSITE profilePS5103211.772242281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-9242281IPR001471AP2/ERF domain
SMARTSM003801.1E-8242293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSGTPLGD EQGAVEESPR TVEDFLGGVG  60
GAGAPPQPAA AADQDHQLVC GELGSITARF LRHYPAAPAG TTVENPGAVT VAAMSSTDVA  120
GAESDQARRP AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD  180
KEEKAARAYD LAALKYWGPT TTTNFPVSNY EKELEEMKSM TRQEFIASLR RKSSGFSRGA  240
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA RRTTSLRSSS AGSTPSPTLT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1230.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139082
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139082_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106068.20.0uncharacterized protein LOC103638861
SwissprotQ6PQQ31e-103AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB4FSB50.0B4FSB5_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G139082_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-104AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]