PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G138683_P01
Common NameLOC100381682, ZEAMMB73_479207
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 466aa    MW: 49090.7 Da    PI: 6.262
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G138683_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.5e-31212270259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  GRMZM2G138683_P01 212 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSLLVITYNSEHNHP 270
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.684206272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-31208272IPR003657WRKY domain
SuperFamilySSF1182904.05E-26209272IPR003657WRKY domain
SMARTSM007747.8E-38211271IPR003657WRKY domain
PfamPF031067.0E-26213270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MCDYFLQRME DDRHHHHQAG GDLTDVVRAG GAMHPAAVAE LSSTATTGWQ LPAEPAGPPG  60
LFPPARSSSS SDGGAFAGLS GPFASDFRAD SAGVDPSPAD FFDFEAPAVG GGRGGMVEGG  120
GPPQMPALSP REVRPYSVMM GGDTVKIGVP AMMPGGLPVG PPCAFDAIAG MQMPSPHCGG  180
IKRRKNQARK VVCIPAPAAS AGGRTTGEVV PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS  240
KGCPARKQVE RSRTDPSLLV ITYNSEHNHP WPTQRNALAG STRSHHAKSS KNKYSSHSLP  300
QTPNLKAEPE HHQASGAVPS ATAATAATAT STTTTTSTTS NSTPPPPPTM AVKEEAIMVG  360
SEMEKVIDHH DASGWLDHGD LMQQMFSQSY YRPMIPEAAG GGLHADDFFA DLAELESDPM  420
SLIFPAGGEP GKENKSLDAD PLFNMLDWGA TNVAATSSFE QDESGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22185273280Disease resistance protein RRS1
5w3x_D1e-22185273280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G138683
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G138683_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619830.0BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167966.10.0uncharacterized protein LOC100381682
TrEMBLC0HI270.0C0HI27_MAIZE; Putative WRKY transcription factor 14
STRINGGRMZM2G138683_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-60WRKY DNA-binding protein 35