PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G138396_P01
Common NameZm.133852
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 263aa    MW: 27923.3 Da    PI: 6.2813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G138396_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20142190355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+W+AeIrdp+    r +r++lg+f+taeeAa+a++ a+ +++g
  GRMZM2G138396_P01 142 YRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFDTAEEAARAYDCAAVEFRG 190
                        9*******.**********82....48**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-33141198IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-23141198IPR016177DNA-binding domain
PROSITE profilePS5103225.594141198IPR001471AP2/ERF domain
SMARTSM003808.0E-35141204IPR001471AP2/ERF domain
PfamPF008472.5E-14142190IPR001471AP2/ERF domain
CDDcd000183.84E-31142198No hitNo description
PRINTSPR003671.7E-12142153IPR001471AP2/ERF domain
PRINTSPR003671.7E-12164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MTKKLISIST MAGKQGCKEQ SNDRRIQASI QGDAKSVVVG FGGRLVTREQ EQEDAIIVAA  60
LRHVVSGYST PPPEVVVTVA GGEACGTCGI DGCLGCDFFG APELAQEAVS CGTGQVATTA  120
SVGGGAAAAA LRPRRRRNRN MYRGVRQRPW GKWAAEIRDP RRAARVWLGT FDTAEEAARA  180
YDCAAVEFRG PRAKLNFPGH EALFQGHGDT AAAADTETLT PSPGEWQLGG GAGDELWEGL  240
QDLMKQDEVD RWLAPVFGAA SSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21142198663ATERF1
3gcc_A2e-21142198663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131138RPRRRRNR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G138396
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G138396_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9666670.0EU966667.1 Zea mays clone 296119 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144222.21e-169ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ061e-32EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1D6ERG60.0A0A1D6ERG6_MAIZE; Ethylene-responsive transcription factor ERF109
STRINGGRMZM2G138396_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-24redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]