PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G137736_P01 | ||||||||
Common Name | LOC100275992, ZEAMMB73_918275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 23953.1 Da PI: 8.7166 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H GRMZM2G137736_P01 85 YTCGYCRREFRSAQALGGHMNVH 107 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.66E-6 | 84 | 112 | No hit | No description |
PROSITE profile | PS50157 | 11.074 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MIHLDTKCYY LASLAQLLAT YRTTPPATRT PAMESSRDHG RGLKPLPAWT TTTTPAGTGH 60 SFSLAAGCFP WPPQRSSPPP SVSCYTCGYC RREFRSAQAL GGHMNVHRRD RARLRQCCSA 120 SAAAHPSASL PSPALTARHQ HSRAPIPNLN FSPQHCAAGG SMAAADPVIY SLFSTTTSSS 180 TAVATKAAVE VSLELGIGVC GRSSGRGGGV VEDDGLDLEL RLGCAWE |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G137736 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G137736_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU959193 | 0.0 | EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143365.2 | 1e-165 | uncharacterized protein LOC100275992 | ||||
TrEMBL | A0A1D6J4G9 | 1e-139 | A0A1D6J4G9_MAIZE; Transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A3L6G5K8 | 1e-139 | A0A3L6G5K8_MAIZE; Zinc finger protein 10 | ||||
STRING | GRMZM2G137736_P01 | 1e-164 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42410.1 | 7e-15 | zinc finger protein 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G137736_P01 |