PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137510_P03
Common NameLOC100285996, ZEAMMB73_384384
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 273aa    MW: 30579.6 Da    PI: 10.7557
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137510_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.7e-241260250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       rien+  rqvtfskRr g+ KKA EL vLCda+va+++fs +g+l++++
  GRMZM2G137510_P03 12 RIENSVSRQVTFSKRRRGLAKKARELAVLCDADVALLVFSDKGRLHDFA 60
                       8**********************************************97 PP
2K-box55.42.7e-1988148969
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                          e+ + +++ ++ kL++++e ++++qR+l+Ge+LesL+++e qqLe++++++l+++Rs+K
  GRMZM2G137510_P03  88 YPEESQGNMSYDHIKLRSKLEAIKKSQRNLMGEQLESLTFREVQQLEHRIDSALRNVRSRK 148
                        55677899****************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.787363IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-31362IPR002100Transcription factor, MADS-box
CDDcd002652.16E-34475No hitNo description
SuperFamilySSF554555.62E-28482IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-26525IPR002100Transcription factor, MADS-box
PfamPF003191.0E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-262540IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-264061IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1591149IPR002487Transcription factor, K-box
PROSITE profilePS512979.17593179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRGRGKVEV RRIENSVSRQ VTFSKRRRGL AKKARELAVL CDADVALLVF SDKGRLHDFA  60
AHGSMERILG RYERYLLCED RDDVTQDYPE ESQGNMSYDH IKLRSKLEAI KKSQRNLMGE  120
QLESLTFREV QQLEHRIDSA LRNVRSRKRW RSNRKFCTFG SHLAGNFSDG TKWHSREGEG  180
CSGGIIIPAH HHQHRSSFFH GSGGGGPSKP EHLSRRLRRA RNGGGGGDQV AVVDAPAICR  240
QPTAGTALNC LSSQMIHAAC SSSILVSIRT RFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-16475272Myocyte-specific enhancer factor 2B
1tqe_Q4e-16475272Myocyte-specific enhancer factor 2B
1tqe_R4e-16475272Myocyte-specific enhancer factor 2B
1tqe_S4e-16475272Myocyte-specific enhancer factor 2B
6c9l_A4e-16475272Myocyte-specific enhancer factor 2B
6c9l_B4e-16475272Myocyte-specific enhancer factor 2B
6c9l_C4e-16475272Myocyte-specific enhancer factor 2B
6c9l_D4e-16475272Myocyte-specific enhancer factor 2B
6c9l_E4e-16475272Myocyte-specific enhancer factor 2B
6c9l_F4e-16475272Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.267280.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137510
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137510_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666550.0BT066655.1 Zea mays full-length cDNA clone ZM_BFb0041O16 mRNA, complete cds.
GenBankKJ7275050.0KJ727505.1 Zea mays clone pUT5364 MADS transcription factor (MADS34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662068.11e-102MADS-box transcription factor 14 isoform X1
SwissprotQ2QQA31e-58MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A1D6IV931e-100A0A1D6IV93_MAIZE; Agamous-like MADS-box protein AGL8
TrEMBLC0PED61e-100C0PED6_MAIZE; Agamous-like MADS-box protein AGL8
STRINGGRMZM2G137510_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-38AGAMOUS-like 8