PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137510_P02
Common NameLOC100285996, MADS34, ZEAMMB73_384384
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 25854.2 Da    PI: 8.8367
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137510_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.52e-241260250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       rien+  rqvtfskRr g+ KKA EL vLCda+va+++fs +g+l++++
  GRMZM2G137510_P02 12 RIENSVSRQVTFSKRRRGLAKKARELAVLCDADVALLVFSDKGRLHDFA 60
                       8**********************************************97 PP
2K-box645.6e-2288163984
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                          e+ + +++ ++ kL++++e ++++qR+l+Ge+LesL+++e qqLe++++++l+++Rs+K+ +l+eq   l k +
  GRMZM2G137510_P02  88 YPEESQGNMSYDHIKLRSKLEAIKKSQRNLMGEQLESLTFREVQQLEHRIDSALRNVRSRKETFLMEQNGILEKEK 163
                        55677899************************************************************88776544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.787363IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-31362IPR002100Transcription factor, MADS-box
CDDcd002657.17E-36475No hitNo description
SuperFamilySSF554553.92E-28482IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-26525IPR002100Transcription factor, MADS-box
PfamPF003197.7E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-262540IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-264061IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1791164IPR002487Transcription factor, K-box
PROSITE profilePS5129711.08293184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRGKVEV RRIENSVSRQ VTFSKRRRGL AKKARELAVL CDADVALLVF SDKGRLHDFA  60
AHGSMERILG RYERYLLCED RDDVTQDYPE ESQGNMSYDH IKLRSKLEAI KKSQRNLMGE  120
QLESLTFREV QQLEHRIDSA LRNVRSRKET FLMEQNGILE KEKAAVGASS SLHTTTSTAA  180
ASSTAAAAAA LPNLNICPDD SDEPGMAAAA GIRLPWWMLQ PSAVSQRQEQ H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-16475272Myocyte-specific enhancer factor 2B
1tqe_Q1e-16475272Myocyte-specific enhancer factor 2B
1tqe_R1e-16475272Myocyte-specific enhancer factor 2B
1tqe_S1e-16475272Myocyte-specific enhancer factor 2B
6c9l_A1e-16475272Myocyte-specific enhancer factor 2B
6c9l_B1e-16475272Myocyte-specific enhancer factor 2B
6c9l_C1e-16475272Myocyte-specific enhancer factor 2B
6c9l_D1e-16475272Myocyte-specific enhancer factor 2B
6c9l_E1e-16475272Myocyte-specific enhancer factor 2B
6c9l_F1e-16475272Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.267280.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137510
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137510_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666550.0BT066655.1 Zea mays full-length cDNA clone ZM_BFb0041O16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662068.11e-172MADS-box transcription factor 14 isoform X1
SwissprotQ2QQA35e-81MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLC0PED61e-170C0PED6_MAIZE; Agamous-like MADS-box protein AGL8
STRINGGRMZM2G137510_P031e-101(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-40AGAMOUS-like 8
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]