PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G137510_P01 | ||||||||
Common Name | LOC100285996, ZEAMMB73_384384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27529.2 Da PI: 8.8344 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.3 | 2.2e-24 | 12 | 60 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien+ rqvtfskRr g+ KKA EL vLCda+va+++fs +g+l++++ GRMZM2G137510_P01 12 RIENSVSRQVTFSKRRRGLAKKARELAVLCDADVALLVFSDKGRLHDFA 60 8**********************************************97 PP | |||||||
2 | K-box | 74.8 | 2.3e-25 | 88 | 176 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+ + +++ ++ kL++++e ++++qR+l+Ge+LesL+++e qqLe++++++l+++Rs+K+++ll++i+el++ke l e+n L+k+ GRMZM2G137510_P01 88 YPEESQGNMSYDHIKLRSKLEAIKKSQRNLMGEQLESLTFREVQQLEHRIDSALRNVRSRKDHILLNSIQELRNKETFLMEQNGILEKE 176 55677899***************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.787 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.3E-31 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-28 | 4 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.52E-35 | 4 | 75 | No hit | No description |
PRINTS | PR00404 | 1.9E-26 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-26 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-26 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-22 | 91 | 176 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.994 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGRGKVEV RRIENSVSRQ VTFSKRRRGL AKKARELAVL CDADVALLVF SDKGRLHDFA 60 AHGSMERILG RYERYLLCED RDDVTQDYPE ESQGNMSYDH IKLRSKLEAI KKSQRNLMGE 120 QLESLTFREV QQLEHRIDSA LRNVRSRKDH ILLNSIQELR NKETFLMEQN GILEKEKAAV 180 GASSSLHTTT STAAASSTAA AAAALPNLNI CPDDSDEPGM AAAAGIRLPW WMLQPSAVSQ 240 RQEQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 4 | 75 | 2 | 72 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26728 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G137510 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G137510_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975067 | 0.0 | EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152356.1 | 0.0 | uncharacterized protein LOC100285996 | ||||
Swissprot | Q2QQA3 | 8e-77 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | B6UCV2 | 1e-180 | B6UCV2_MAIZE; MADS-box transcription factor 14 | ||||
STRING | GRMZM2G137510_P03 | 1e-101 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 8e-43 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G137510_P01 |