PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G137502_P01 | ||||||||
Common Name | cl830_1(337), DOF36 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 351aa MW: 36732.1 Da PI: 4.7224 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.3 | 8.2e-39 | 61 | 121 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++a +cprC stntkfCyynny+l+qPryfCk+CrryWt+GG+lrnvPvGgg+r+nk++s GRMZM2G137502_P01 61 PDAAHSCPRCSSTNTKFCYYNNYNLTQPRYFCKTCRRYWTHGGTLRNVPVGGGCRRNKRAS 121 577899****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 62 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-32 | 64 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.171 | 65 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 67 | 103 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDMNSNANNS TAAAASAPIN NQQEAVVSSP TRKEQARNPK KARAAPQQAG GSGEPRPRPP 60 PDAAHSCPRC SSTNTKFCYY NNYNLTQPRY FCKTCRRYWT HGGTLRNVPV GGGCRRNKRA 120 SSSSSPFPGP SSTAATSAAM EKTVSTRLML MATSTMAMPS PTAGLFVPDD MSPAFTPTTG 180 GSGFDDLAGM DEQHQQGFLP FSPLSLSDQA PELAPGGGGD TTPSFLDMLT GGYLDGGGYG 240 GMSGGSDAMD MPFSLPEMGP PTTDPMPFQL QWTSSELDNY INDDGGYAAG PAAGVQQQQQ 300 QQQQQINGGD HQKQDENKEA GNGKGNDDGG GGSSSVYSFW MNTSGSDGAE G |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.33078 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G137502 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Seed endosperm. {ECO:0000269|PubMed:9207153}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G137502_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035305 | 0.0 | BT035305.1 Zea mays full-length cDNA clone ZM_BFb0054C13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131758.1 | 0.0 | uncharacterized protein LOC100193126 | ||||
Swissprot | O24463 | 9e-72 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A317YCU1 | 0.0 | A0A317YCU1_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | B4FDW7 | 0.0 | B4FDW7_MAIZE; C2C2-DOF transcription factor | ||||
STRING | GRMZM2G137502_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 4e-32 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G137502_P01 |
Entrez Gene | 100193126 |
Publications ? help Back to Top | |||
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