PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137413_P01
Common NameARF14
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 511aa    MW: 56730.8 Da    PI: 6.832
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137413_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23122222198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++aee+       ++++ +  +l  +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  GRMZM2G137413_P01 122 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmtQNPPWQ--ELLAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL-- 209
                        99**************************99975555545..8************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  GRMZM2G137413_P01 210 RGENGELRVGVRR 222
                        449999*****98 PP
2Auxin_resp103.13.6e-34248332182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdl...dpvrWpnSkWrsL 82 
                        a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++kvsvGmRfkm+fe+++s+errlsGt++g+  +   +++ W nS WrsL
  GRMZM2G137413_P01 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKVSVGMRFKMRFEGDESPERRLSGTIIGLGSMpanSTSPWANSDWRSL 332
                        789*************************************************************988753336789********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-43113251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-40118237IPR015300DNA-binding pseudobarrel domain
CDDcd100177.81E-21121222No hitNo description
SMARTSM010191.0E-20122224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.364122224IPR003340B3 DNA binding domain
PfamPF023626.8E-21122222IPR003340B3 DNA binding domain
PfamPF065072.0E-32248332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MASAGVAGCS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ  60
HLPLFDLPPK ILCKVVNVEL RAETDSDEVY AQIMLQPEAD QSEPTSPDSE PPEPERCNVY  120
SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELLAKDLHGN EWHFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHNM  240
HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKVSVGM RFKMRFEGDE  300
SPERRLSGTI IGLGSMPANS TSPWANSDWR SLRVQWDEPS AILRPDRVSP WELEPLDATN  360
PQPPQPHLRN KRARPPALLS IAPELPQVFG FLKSPAEPAQ AFSFSRPQQT QELYHSNPSS  420
IFSSSLNVGF SSKNDRSTPI NSHLYWTMRQ TRTESYSASI NKAPTEKKQE SATSGCRLFG  480
IEIGSAVSPV ATVASVGQDQ PPALSVDVES D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033587357Auxin response factor 1
4ldw_A0.033587357Auxin response factor 1
4ldw_B0.033587357Auxin response factor 1
4ldx_A0.033587357Auxin response factor 1
4ldx_B0.033587357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.571590.0ear| embryo| endosperm| meristem| ovary| pedicel| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137413
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137413_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0879910.0BT087991.1 Zea mays full-length cDNA clone ZM_BFb0342B01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353929.10.0uncharacterized protein LOC100502393
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLD9HNU10.0D9HNU1_MAIZE; Auxin response factor
STRINGGRMZM2G137413_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]