PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137380_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 583aa    MW: 65233.4 Da    PI: 10.0169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137380_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-084781441
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41
                        h ++Er+RR++iN++f eL +++P +   +++  +K 
  GRMZM2G137380_P01 47 DHIIAERKRRQKINQRFIELSTVIPGL---KKELQEKL 81
                       6999*********************98...55545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-74482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-64782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-84783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-54875No hitNo description
SuperFamilySSF482641.96E-20339457IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.101.3E-19342457IPR001128Cytochrome P450
PfamPF000674.5E-11343456IPR001128Cytochrome P450
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MESPHLRPTP SCAVSATSSL LPDLVYGSPP TRRAAVLKSV GSIYAQDHII AERKRRQKIN  60
QRFIELSTVI PGLKKELQEK LKALEDGGSG SNDRSIESWV LIKKPCIVVP GDDAGSPSWD  120
SSGASPATNQ LPEIEAWFLN KNVMVRIHCE DGKGVVVRVL AELEELPLSI VHANVINRQQ  180
IIVKRLLPSL SLGGSPPRNH PSQRQYKSGR SLGRYTSAAT TVRSLMYRRH NEDLDVLPPS  240
LWRKQRFDLQ CVVRRFFIIN RELVSYILTP YIPVVITICK NNMLVRSQRV MEQCVARLDV  300
AMFNANQRPR NQLQQRAPEG KEKKKKKSSW TTEPHLTAAV LVFQARKKLV AMLRQMIADR  360
RSSGCTRDDM LDALLSGNEG TRAKLSDDQI IDLLITLIYS GYETVSTTSM MAVKYLSDNP  420
KALGQIRKEH LDIRKAKSPE DPLDWNDYKS MTFTKAIELP LHSTDASGSS TMYMIIVRNE  480
LRCCLMVNLK TRKSYAFLLN VNRVGEEGDY YNSGMRHGSP TLGVVEALDA TRATAVTAEE  540
AHTTAKEMEK KTATTAKLAA IAMDKLGFVV VAVASQWHIA IWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a15_A7e-14337457200322Cytochrome P450 90B1
6a17_A7e-14337457200322Cytochrome P450 90B1
6a18_A7e-14337457200322Cytochrome P450 90B1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.40641e-175ear| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137380
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137380_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355651e-173BT035565.1 Zea mays full-length cDNA clone ZM_BFb0069K21 mRNA, complete cds.
GenBankEU9748701e-173EU974870.1 Zea mays clone 460186 cytochrome P450 CYP85A1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G137380_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-14bHLH family protein