PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137341_P01
Common NameEREB16, LOC100284491
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 255aa    MW: 27241.2 Da    PI: 5.8018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137341_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1879129155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  GRMZM2G137341_P01  79 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 129
                        68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1379129IPR001471AP2/ERF domain
PROSITE profilePS5103222.08980137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3080139IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2180138IPR016177DNA-binding domain
SMARTSM003806.0E-2880143IPR001471AP2/ERF domain
PRINTSPR003673.3E-88192IPR001471AP2/ERF domain
CDDcd000187.25E-2181139No hitNo description
PRINTSPR003673.3E-8103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLRLVPPPAR HAHGHYHSHT QAAAMDAAGS FSDYSSGTPS PVAGGGGGDD FGSSSYMTVS  60
SAPPKRRAGR TKFKETRHPV YKGVRRRNPG RWVCEVREPH GKQRIWLGTF ETAEMAARAH  120
DVAALALRGR AACLNFADSP RLLRVPPTGS GHDEIRRAAA VAADQFRPAP DQGNVAAEEE  180
AADTPPPDAL PSVTMQSVDD DPYCIIDDRL DFGMQGYLDM AQGMLIDPPP MAGSSTSGGG  240
GDDDDDDGEV KLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14781361271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137341
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137341_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278730.0KJ727873.1 Zea mays clone pUT5966 AP2-EREBP transcription factor (EREB16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150858.21e-168dehydration-responsive element-binding protein 1A
SwissprotQ6EP771e-96DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLA0A060D7N00.0A0A060D7N0_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G137341_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-36C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]