PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G136494_P01 | ||||||||
Common Name | ZEAMMB73_700752, Zm.23984 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 419aa MW: 44394.2 Da PI: 8.5301 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.8 | 2.4e-07 | 176 | 198 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg++F r+++L+ H++ H GRMZM2G136494_P01 176 PCPDCGEVFVRQESLQLHQSIrH 198 7******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 174 | 194 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.328 | 175 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 175 | 198 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.53E-18 | 200 | 247 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.7E-10 | 202 | 418 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 1.53E-18 | 274 | 418 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MVERPGRSAG VREANKTSAA AMVKTTTTTN KEELESPSYR LAAFKSLFSC RNSHARPRAP 60 DTGTGSRSKR LGCSAPSICK LKDDSVPVPP KETTGTASAG EPCKRRASVS GSSDRCVKKP 120 QCGAGSNKQL QRGGSSSSSG GSSFRAGMQL RRLSGCYECH MVVAGSASMR ATTICPCPDC 180 GEVFVRQESL QLHQSIRHAV SELGTDDTSR NIIEIIFQSS WLKKQSPVCK VDRILKVNNT 240 PRTLARFEEY RDAVKARAGA EQLAVAAANS NRHPRCTADG NELLRFHCAT LACSLGLNGA 300 THLCDAAGTC AACGIIRDGF SSGGVLTMAT SGRAHDAAEA GAGLDEETTP RAMLVCRVIA 360 GRVKRPKEAV PEEEAVADAA EESEYDSVAG SAGVYSNLEE LLVFNPRAIL PCFVVVYKA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23984 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G136494 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G136494_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968218 | 0.0 | EU968218.1 Zea mays clone 316720 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401257.1 | 0.0 | uncharacterized protein LOC109942996 | ||||
TrEMBL | A0A3L6GBE2 | 0.0 | A0A3L6GBE2_MAIZE; Uncharacterized protein | ||||
TrEMBL | K7UNG9 | 0.0 | K7UNG9_MAIZE; C2H2-like zinc finger protein | ||||
STRING | GRMZM2G136494_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 | Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 4e-85 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G136494_P01 |