PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G136369_P01
Common NameZEAMMB73_682309
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 442aa    MW: 48261.8 Da    PI: 4.3394
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G136369_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.93e-122953381356
                        HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        + L e+F+ ++yps++ +e LA++lgLt rqV  WF  rR   +
  GRMZM2G136369_P01 295 QKLHEHFKTQPYPSRSVKESLAEELGLTFRQVNKWFETRRHSAR 338
                        6899************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-13275334IPR009057Homeodomain-like
PROSITE profilePS5007114.009280340IPR001356Homeobox domain
SMARTSM003892.0E-12282344IPR001356Homeobox domain
SuperFamilySSF466891.75E-11284338IPR009057Homeodomain-like
CDDcd000865.09E-13289338No hitNo description
PfamPF000461.3E-9295338IPR001356Homeobox domain
PROSITE patternPS000270315338IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRNKINLGSN QKVFPDAAAM ANDSKQDDAF DLPSDDSDDN DFDPNMPEEH VVGKDEESSE  60
EDEDGGSDSD DSDFLTCSDD SEPLIDKKVD DLRLPSEDSE DDDYDPAGPD SDKDVEKKSS  120
SDESDFTSDS DDFCKEISKS GHDEVSSPLL PDAKVGDMEK ITAQAKTTSS ADDPMETEID  180
QGVVLPDSRR RQAERLDYKK LYDEAYGEAS SDSSDDEEWS GKNTPIIKSN EEGEANSPAG  240
KGSRVVHHND ELTTQSTKKS LHSIHGSVDE KPGDLTSNGS NSTARKGHFG PVINQKLHEH  300
FKTQPYPSRS VKESLAEELG LTFRQVNKWF ETRRHSARVA SSRKGISLDK HSPQNTNSQV  360
TASMEPKEPE GTVVEESNVC LNGGTTISKE AVSSKVGSRT PGSDVGGSKV DSAEDQNPGP  420
DLAEKARQKA IQQELRKKKM GR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424437KARQKAIQQELRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.821450.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G136369
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in kernels, leaves and shoots but not in roots.
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G136369_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX675610.0X67561.1 Z.mays Zmhox1a mRNA for homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105447.10.0homeobox protein HOX1A
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A1D6FTH10.0A0A1D6FTH1_MAIZE; Homeobox1
TrEMBLA0A1D6FTH40.0A0A1D6FTH4_MAIZE; Homeobox1
TrEMBLQ9ST490.0Q9ST49_MAIZE; Homeodomain transcription factor
STRINGGRMZM2G136369_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.18e-10Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]