PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G136266_P01

Common Name

ZEAMMB73_620403, Zm.119007

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 398aa MW: 42994.6 Da PI: 7.2636

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G136266_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.8e-10	232	290	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ l++e+ GRMZM2G136266_P01 232 KRAKRILANRQSAARSKERKIMYTSELEKKVQTLQTEATTLSAQLTLLQRDTTGLTAEN 290 9********************************************99998877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.3E-16	228	292	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	230	293	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-9	232	286	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	232	286	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.8E-11	232	286	No hit	No description
CDD	cd14703	1.35E-23	233	282	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MYDTHHPHRT HPPTRPSAAH THTHTHTHTL HASETTRRTA ASRPPPPRPG ACELALASLP 60 APTEMDPRFP LPAAAAPSTG GGGGARGHHR RAHSETFLSF HDADLLLDPD GDFFSDLDFP 120 SLSDDSPAAS DPTPPPHPQQ QPPQASPAPR PPGGTHTRSL SLDAAFFEGL AFQGPSGSAG 180 GGGGPGHKRS GSMDGDTSPF EGESALSSGL PDYAKKAMPA ERIAELALID PKRAKRILAN 240 RQSAARSKER KIMYTSELEK KVQTLQTEAT TLSAQLTLLQ RDTTGLTAEN RELKLRLQSM 300 EEQAKLRDAL NEALREEVQR LKIAAGQVGN MNGNPFNGGL QQQIPSYFVQ QQQQQQTPYF 360 GGHQAQLHNQ NQNHRHQISS NVGQTLSGQS LNDSMDFM

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MYDTHHPHRT HPPTRPSAAH THTHTHTHTL HASETTRRTA ASRPPPPRPG ACELALASLP  60
APTEMDPRFP LPAAAAPSTG GGGGARGHHR RAHSETFLSF HDADLLLDPD GDFFSDLDFP  120
SLSDDSPAAS DPTPPPHPQQ QPPQASPAPR PPGGTHTRSL SLDAAFFEGL AFQGPSGSAG  180
GGGGPGHKRS GSMDGDTSPF EGESALSSGL PDYAKKAMPA ERIAELALID PKRAKRILAN  240
RQSAARSKER KIMYTSELEK KVQTLQTEAT TLSAQLTLLQ RDTTGLTAEN RELKLRLQSM  300
EEQAKLRDAL NEALREEVQR LKIAAGQVGN MNGNPFNGGL QQQIPSYFVQ QQQQQQTPYF  360
GGHQAQLHNQ NQNHRHQISS NVGQTLSGQS LNDSMDFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	252	ARSKERKIM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.119007	0.0	ear\| meristem\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G136266

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in dividing cells, present in leaves, roots and seedlings. {ECO:0000269\|PubMed:15108305, ECO:0000269\|PubMed:15824315}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269\|PubMed:11432846, ECO:0000269\|PubMed:12124400, ECO:0000269\|PubMed:15108305, ECO:0000269\|PubMed:15824315, ECO:0000269\|PubMed:17947581, ECO:0000269\|PubMed:19820165, ECO:0000269\|PubMed:20547563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G136266_P01

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269\|PubMed:15108305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728521	0.0	KJ728521.1 Zea mays clone pUT6826 bZIP transcription factor (bZIP10) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151647.1	0.0	transcription factor PosF21
Swissprot	Q9MA75	2e-70	VIP1_ARATH; Transcription factor VIP1
TrEMBL	K7TX82	0.0	K7TX82_MAIZE; Transcription factor VIP1
STRING	GRMZM2G136266_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1925	38	92
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43700.1	3e-44	VIRE2-interacting protein 1

Link Out ? help Back to Top
Phytozome	GRMZM2G136266_P01

Publications ? help Back to Top
Wang Y, et al. The putative Agrobacterium transcriptional activator-like virulence protein VirD5 may target T-complex to prevent the degradation of coat proteins in the plant cell nucleus. New Phytol., 2014. 203(4): p. 1266-81 [PMID:24865527] Xu DB, et al. A G-protein β subunit, AGB1, negatively regulates the ABA response and drought tolerance by down-regulating AtMPK6-related pathway in Arabidopsis. PLoS ONE, 2015. 10(1): p. e0116385 [PMID:25635681] Chen J, et al. ZmbZIP91 regulates expression of starch synthesis-related genes by binding to ACTCAT elements in their promoters. J. Exp. Bot., 2016. 67(5): p. 1327-38 [PMID:26689855] Tsugama D,Liu S,Takano T VIP1 is very important/interesting protein 1 regulating touch responses of Arabidopsis. Plant Signal Behav, 2016. 11(6): p. e1187358 [PMID:27171129] Tsugama D,Liu S,Takano T The bZIP Protein VIP1 Is Involved in Touch Responses in Arabidopsis Roots. Plant Physiol., 2016. 171(2): p. 1355-65 [PMID:27208231] Takeo K,Ito T Subcellular localization of VIP1 is regulated by phosphorylation and 14-3-3 proteins. FEBS Lett., 2017. 591(13): p. 1972-1981 [PMID:28542772] Wang L,Lacroix B,Guo J,Citovsky V The Agrobacterium VirE2 effector interacts with multiple members of the Arabidopsis VIP1 protein family. Mol. Plant Pathol., 2018. 19(5): p. 1172-1183 [PMID:28802023]