PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G135783_P01
Common NameLOC100191342
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 348aa    MW: 37158.8 Da    PI: 12.3102
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G135783_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702123.42.7e-3897185386
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsal 86 
                         g++sCqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaakrrerqqqla ++++aaa++     +++ +kr+r   s ++ a+
  GRMZM2G135783_P01  97 GGGVSCQDCGNQAKKDCVHQRCRTCCKSRGFTCSTHVKSTWVPAAKRRERQQQLAVLAASAAATTagagpSRDPTKRPRARLSVATPAT 185
                        5789***************************************************9999988887566666666666666544444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.5E-3799186IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.6E-27101143IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAGFPLGGGG HSRDAPASSV PPVHPSDAAS FLYAARAGAG LQLWQQHEQQ QQHPFYTSNI  60
IRFSDDPTGA PPSLTGAASS SSSRGTRGGA GSGGGGGGGV SCQDCGNQAK KDCVHQRCRT  120
CCKSRGFTCS THVKSTWVPA AKRRERQQQL AVLAASAAAT TAGAGPSRDP TKRPRARLSV  180
ATPATSSDGH GRGEVPTGGE LGGGVPVRAP GAGRPGRGGG RVPDHRQHRR PRVQGHPSRR  240
WPSQLACRWS RRRRHRVPLP PRRGRIAAEH GSHWRSRRRW RGECRRVIGC GDGPVPDART  300
LRRLPRRRAV LPRPPETVTA GSLARQQPSR CVTTSRLPSL ARSICQFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.192510.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G135783
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G135783_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650250.0EU965025.1 Zea mays clone 283290 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130248.11e-126uncharacterized protein LOC100191342
TrEMBLB4F8H31e-124B4F8H3_MAIZE; Protein SHI RELATED SEQUENCE 1
STRINGGRMZM2G135783_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-26Lateral root primordium (LRP) protein-related