PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G135461_P01 | ||||||||
Common Name | ZEAMMB73_045179 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 132aa MW: 15089.2 Da PI: 7.592 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 58.6 | 2.6e-18 | 1 | 57 | 22 | 70 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssa 70 +Rls+ +a++f +Lqd+LGfdk+skt++WLl q+kp i+ l++ +++s+ GRMZM2G135461_P01 1 MRLSVGVAREFLALQDRLGFDKASKTLNWLLAQSKPPIDCLVDAaeqilgvgKTTSQ 57 8****************************************9995555544422222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.403 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.3E-16 | 1 | 75 | IPR005333 | Transcription factor, TCP |
SMART | SM00271 | 3.1E-10 | 43 | 100 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 12.735 | 44 | 111 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.2E-9 | 46 | 64 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.2E-12 | 47 | 85 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 1.05E-13 | 47 | 83 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 1.4E-14 | 47 | 88 | IPR001623 | DnaJ domain |
CDD | cd06257 | 2.11E-12 | 47 | 80 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.2E-9 | 64 | 79 | IPR001623 | DnaJ domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MRLSVGVARE FLALQDRLGF DKASKTLNWL LAQSKPPIDC LVDAAEQILG VGKTTSQQEI 60 KKAYHKLALR LHPDKNPGDE VTEADIEEFE AKYRGSDYEK TDLKDLYTKY KGNMNRNNYL 120 LYHIVKSETV LL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G135461 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G135461_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960947 | 1e-77 | EU960947.1 Zea mays clone 229801 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025604433.1 | 1e-27 | chaperone protein dnaJ 6 isoform X2 | ||||
TrEMBL | A0A1D6KDY4 | 8e-61 | A0A1D6KDY4_MAIZE; Chaperone protein dnaJ 6 | ||||
STRING | GRMZM2G135461_P01 | 1e-93 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.1 | 7e-13 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G135461_P01 |