PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G135052_P01
Common NameLOC103638178, ZEAMMB73_810931
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 277aa    MW: 30782.9 Da    PI: 7.1707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G135052_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-1266110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT  E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  GRMZM2G135052_P01  66 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 110
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.54E-1660116IPR009057Homeodomain-like
PROSITE profilePS5129414.23461115IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1864113IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.9E-664116IPR009057Homeodomain-like
SMARTSM007177.1E-1065113IPR001005SANT/Myb domain
PfamPF002493.3E-1066110IPR001005SANT/Myb domain
CDDcd001671.48E-768111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVSTSSTPHP LDPSVPAVVG GGKEEEEEAV ESCAAAAATP LPPVGIDDEE EGPRRVRKPY  60
TITKSRESWT DPEHDKFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY FLKVQKNGTG  120
EHLPPPRPKR KAAHPYPHKS SKKALQVVLP QQVSHIMEQG CGTPMDVATV ATDSSVNNAF  180
PVQHFSPRHT QAMPDFARVY NFLGSIFDPE TNGHLQKLKE MDPIDAETVL LLMKNLSINL  240
TSPNFEEHRR LLSSDASSMD QKSGSSRVHL PFMITSK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.231340.0endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G135052
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G135052_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9634640.0EU963464.1 Zea mays clone 262971 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437676.11e-167protein REVEILLE 6
SwissprotQ8H0W31e-85RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1D6NX520.0A0A1D6NX52_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G135052_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.15e-68MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]