PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G134998_P01
Common NameLOC100283667
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 379aa    MW: 41444.6 Da    PI: 6.9414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G134998_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05188207120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C  C+k+F+r  n++ H+
  GRMZM2G134998_P01 188 FSCAVCNKTFNRFNNMQMHM 207
                        89*****************9 PP
2zf-C2H213.40.00023283305123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y C  Cgk+F  + + ++H +++
  GRMZM2G134998_P01 283 YACRRCGKRFAVRGDWRTHEKNC 305
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-5180209No hitNo description
PROSITE profilePS5015710.055188215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-5188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SMARTSM00355230246278IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6269303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-6269303No hitNo description
PROSITE profilePS501578.704283303IPR007087Zinc finger, C2H2
SMARTSM0035558283303IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MHSYYRAMHP YAHPYQHHAA AVAPTTKHYG HCHDAEEEDD HQSMLLLSLW PPGHHHHSVA  60
AAASSACSSP PTICATTSST STSTTSMAAS SASSYPFCLT HQSHYNGGGS AGSSSHSSCF  120
LFHHEHQQQE EPDVSISLSI APPRSNNDAA SCGGRGFAAP STVTTPEVPT SQYWIPSASE  180
ILVGSTQFSC AVCNKTFNRF NNMQMHMWGH GSQYRKGSES LLRGAIITVG TAAASSSSSL  240
TRLPCYCCAE GCRNNIEHPR ARPLKDFRTL QTHYRRKHGA RPYACRRCGK RFAVRGDWRT  300
HEKNCGRLWF CACGSDFKHK RSLKDHVRSF GGGHAPRVVE SVAVEDEEEE EDDDDGDLQT  360
FDDDNANGAS EEPSDMAVV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G134998
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G134998_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9654820.0EU965482.1 Zea mays clone 286328 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001356819.10.0uncharacterized protein LOC100283667 isoform 1
SwissprotQ9FX684e-96ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1D6ENV10.0A0A1D6ENV1_MAIZE; Zinc finger, C2H2 type family protein
TrEMBLA0A3L6G7B60.0A0A3L6G7B6_MAIZE; Zinc finger protein WIP6
STRINGGRMZM2G134998_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-92C2H2-like zinc finger protein