PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G134866_P01
Common NameLOC100277696
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 438aa    MW: 47002 Da    PI: 9.9187
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G134866_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.69.1e-29191288297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                        ++ rlws +Deiv+L+Gl +++ak+g+   ++ di++++  +++++s+kv+++ql +K+rrLK+K++   ++ ksg++p++ ++h+q+++e+
  GRMZM2G134866_P01 191 RPTRLWSLHDEIVILRGLATYRAKRGVlpGSTYDISKLHGRIRSELSVKVTTTQLGDKVRRLKQKYNLLASRGKSGRDPDLPSQHEQSVYEI 282
                        678************************666677*********************************************************** PP

             DUF573  92 skkiWg 97 
                         kk+Wg
  GRMZM2G134866_P01 283 GKKVWG 288
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.7E-27193288IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAPKRPAAAS GSASEASDAE ADAGHHQPSS PSPSKTPPPP NPNPKSTAAG PTSAAEDSTA  60
AGSGSEAAYD SDADHRTAPR NAASPSSKPR STRPRSRSRS RSPDAASYSD GVASDADADP  120
AAVDGADSAD DGNASPLAPP RPSRAEAAAV KPISSRPMDP PRRSMVPSFS EQRSKRPRSV  180
AVPSSVEHLK RPTRLWSLHD EIVILRGLAT YRAKRGVLPG STYDISKLHG RIRSELSVKV  240
TTTQLGDKVR RLKQKYNLLA SRGKSGRDPD LPSQHEQSVY EIGKKVWGGS ANGGGSTGGD  300
GYEIGGDSEE EHEFRESDED VENGRDERAR KNRRVMPIAM ANGNGAGLGA VKANSRGKFD  360
TEKGKDAYPY LWETVEDLSK EHPNGVAFKK AFESIEGPKA RGMEEKLRKF RLTEIRHQLR  420
RMELMKETVK MVLDALEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100RPRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.338490.0pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G134866
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G134866_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432610.0BT043261.1 Zea mays full-length cDNA clone ZM_BFc0135N12 mRNA, complete cds.
GenBankEU9700880.0EU970088.1 Zea mays clone 339529 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144670.10.0GLABROUS1 enhancer-binding protein-like
TrEMBLB4G1M30.0B4G1M3_MAIZE; GLABROUS1 enhancer-binding protein-like
TrEMBLK4JBV40.0K4JBV4_MAIZE; GeBP-type transcription factor (Fragment)
STRINGGRMZM2G134866_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Representative plantOGRP1071349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-13DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]