PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G134073_P01 | ||||||||
Common Name | LOC100284907, ZEAMMB73_009442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 27215.6 Da PI: 8.4232 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.5 | 4.7e-31 | 22 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk.......kvkaeek.ewyfFskrdkkya.tgkrknratksg 81 lp GfrF+Ptdeel+ +yL++k+ + +l++ vi+++d+ +++P+dL p+ +++ + e +fF++ +++ +g + ra+ +g GRMZM2G134073_P01 22 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GVIPDADLARLDPSDLllPAaappaggAADDA-SgEHFFFHRPATRCWrRGGGAARAAGAG 111 699***************************.99**************4433677766433223.34778887776665527999******** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +W+ +gk++ v+s ++ vg+k+tLvf + r g +tdWvmheyrl GRMZM2G134073_P01 112 VWRPSGKETVVVSPrCKRPVGTKRTLVFCpRRRGGGGARTDWVMHEYRL 160 ********99999867889**********666888999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-40 | 15 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.122 | 22 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-20 | 23 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEARPGAWRL QQRGPGAPVA GLPIGFRFRP TDEELLLHYL RRKALACPLP AGVIPDADLA 60 RLDPSDLLLP AAAPPAGGAA DDASGEHFFF HRPATRCWRR GGGAARAAGA GVWRPSGKET 120 VVVSPRCKRP VGTKRTLVFC PRRRGGGGAR TDWVMHEYRL LPAGLHLHGC AANAPPPTNV 180 SSHGGGAAAA DWVVCRIFRR ARPAHRARLG DAQEEEEEHA AVESASSTSS CVTDASGTIG 240 QDDDGDEGIS GSCSVASSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-24 | 10 | 206 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-24 | 10 | 206 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-24 | 10 | 206 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-24 | 10 | 206 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-24 | 10 | 206 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-24 | 10 | 206 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-24 | 10 | 206 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.95453 | 0.0 | endosperm| meristem| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G134073 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G134073_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068635 | 0.0 | BT068635.1 Zea mays full-length cDNA clone ZM_BFb0353I15 mRNA, complete cds. | |||
GenBank | EU970076 | 0.0 | EU970076.1 Zea mays clone 339455 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151274.1 | 0.0 | uncharacterized protein LOC100284907 | ||||
TrEMBL | B6TYL1 | 0.0 | B6TYL1_MAIZE; NAC domain containing protein 84 | ||||
STRING | GRMZM2G134073_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 | Representative plant | OGRP17305 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-22 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G134073_P01 |
Entrez Gene | 100284907 |
Publications ? help Back to Top | |||
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