PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G133972_P01 | ||||||||
Common Name | ZEAMMB73_130915, Zm.25445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 525aa MW: 54407.2 Da PI: 7.89 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.1 | 2.2e-16 | 83 | 143 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ GRMZM2G133972_P01 83 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMRLqeygQVGDANVFYWFQNRKSRSKN 143 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 110.2 | 1.2e-35 | 82 | 145 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++kq GRMZM2G133972_P01 82 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMRLQEYGQVGDANVFYWFQNRKSRSKNKQ 145 579***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.977 | 79 | 144 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.53E-11 | 80 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-6 | 81 | 148 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 82 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.15E-6 | 82 | 145 | No hit | No description |
Pfam | PF00046 | 4.8E-14 | 83 | 142 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MASSFNNKTS HWPSMFRSKH AAEPWQAQPD ISSSPPSLLS GGGSSSTTTI GRCLKHPLSG 60 YSGTPPSSLL LPRCGEERTP DPKPRWNPRP EQIRILEAIF NSGMVNPPRD EIPRIRMRLQ 120 EYGQVGDANV FYWFQNRKSR SKNKQRTGQL GLGLARAPGC GAAAPPVTPQ PLIQNQFQVL 180 ASPAQAPASS SSSSSDRSSG SSKPAPQPMS ATAAAMNFPG PLGAACAQMY YQAHPVAPVS 240 ALPAHKVQDP VASDEPVFQP WPQGYFLSAA EVASILGGQY RHDVPVQQQP PATLPAGAFL 300 GLYNEVTEPT VTGHRTCAWG PAGLGQFWPV GGADHHQHHK HNTTAATNTV ARDAAHEHAT 360 TLGLLQYGFE ASAAMETASA AVPLAASPGT AASVATAGLT SLPASTNAVV VNYDLLQGLA 420 VPGSGSGAVG VSTGGAPPVA VAAAPTAAQE GVVVALCITD SVTGKSVAHN VAAARLDVRA 480 QFGEAAVLLR AVGDRGGLDL VPVPVDALGC TVEPLQHGAF YYVLV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.25445 | 0.0 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G133972 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G133972_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055794 | 0.0 | BT055794.1 Zea mays full-length cDNA clone ZM_BFb0196O06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288514.1 | 0.0 | WUSCHEL-related homeobox 7-like | ||||
Swissprot | Q0JKK6 | 2e-90 | WOX7_ORYSJ; WUSCHEL-related homeobox 7 | ||||
TrEMBL | B8A2K2 | 0.0 | B8A2K2_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G133972_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 | Representative plant | OGRP12908 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-41 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G133972_P01 |