PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G133806_P04
Common Nameial1, ZEAMMB73_446190
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 270aa    MW: 27773.3 Da    PI: 8.3582
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G133806_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.71e-4333131199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kl++++++ +redam+sl+yeA++r+rdPvyG+vgvi+ lq++l+ql++
  GRMZM2G133806_P04  33 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDAMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQ 124
                        7******************************************************************************************* PP

             DUF260  93 elallke 99 
                        +la++k 
  GRMZM2G133806_P04 125 DLARAKY 131
                        **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.67232133IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-4333129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MASSVRAPSG SVIAVASSSS SAALAGVCGT GSPCAACKFL RRKCQPDCVF APYFPPDNPQ  60
KFVRVHRVFG ASNVTKLMNE IHPLQREDAM NSLAYEADMR IRDPVYGCVG VISILQHNLR  120
QLQQDLARAK YELSKYQAAA AAASASTAPT GPQAMAEFIG SAMPNGAAHN FINLGHSAAL  180
GSLGGSTAMF GQQEQFGSNA QMLSRSYDGG EPIARIGMNN GGYEFGYSSA TTMGGSAGAV  240
SGGLGTLGIS SPPFLKSGTA GGDEKPSGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-52291367114LOB family transfactor Ramosa2.1
5ly0_B2e-52291367114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G133806
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. {ECO:0000269|PubMed:17209126}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G133806_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0678360.0BT067836.1 Zea mays full-length cDNA clone ZM_BFc0168M11 mRNA, complete cds.
GenBankEU9626410.0EU962641.1 Zea mays clone 244398 ASYMMETRIC LEAVES2 mRNA, complete cds.
GenBankKJ7277320.0KJ727732.1 Zea mays clone pUT5672 LOB transcription factor (LOB31) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105986.20.0protein IAL1
SwissprotA1YKY71e-171IAL1_MAIZE; Protein IAL1
TrEMBLB6TCC60.0B6TCC6_MAIZE; ASYMMETRIC LEAVES2
STRINGGRMZM2G133806_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.43e-56LBD family protein
Publications ? help Back to Top
  1. Evans MM
    The indeterminate gametophyte1 gene of maize encodes a LOB domain protein required for embryo Sac and leaf development.
    Plant Cell, 2007. 19(1): p. 46-62
    [PMID:17209126]