PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G133675_P02 | ||||||||
Common Name | pco136360, ZEAMMB73_798195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 70aa MW: 7578.49 Da PI: 9.2402 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.5 | 1.5e-05 | 37 | 66 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +++ + erE+ Rd++N+ f eL ++l ++ GRMZM2G133675_P02 37 KKTHKAEREKLKRDQLNDLFVELGSMLGSL 66 678899*******************99774 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.29E-6 | 30 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MVADTESSDS LPGSSNAASE MPANGSIHRK SQEKPPKKTH KAEREKLKRD QLNDLFVELG 60 SMLGSLPGRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.25320 | 1e-104 | embryo| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G133675 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G133675_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039027 | 1e-102 | BT039027.1 Zea mays full-length cDNA clone ZM_BFb0351N03 mRNA, complete cds. | |||
GenBank | BT088171 | 1e-102 | BT088171.1 Zea mays full-length cDNA clone ZM_BFc0043H09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140536.1 | 5e-37 | uncharacterized protein LOC100272601 | ||||
TrEMBL | B4FPI9 | 1e-35 | B4FPI9_MAIZE; Transcription factor bHLH47 | ||||
STRING | GRMZM2G133675_P01 | 2e-36 | (Zea mays) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G133675_P02 |