PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G133398_P02 | ||||||||
Common Name | vp1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 690aa MW: 73120.4 Da PI: 6.1367 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 8.8e-18 | 518 | 613 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 +kvl++sdv+++gr+vlpk+ e h ++k++ ++ + +ed ++r+W++++++ ++ks++y+l+ ++ eFv++n+L+egDf+v++ ++ GRMZM2G133398_P02 518 QKVLKQSDVGSLGRIVLPKEA-EVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SDv 605 79****************996.6777*999***********7778*******99777777777777.********************..555 PP SEE..EEE CS B3 88 sefelvvk 95 ++++++++ GRMZM2G133398_P02 606 KSGKYLIR 613 88877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-25 | 508 | 620 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.81E-30 | 515 | 615 | No hit | No description |
SuperFamily | SSF101936 | 1.44E-19 | 516 | 611 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.334 | 517 | 618 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-15 | 517 | 618 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-15 | 518 | 612 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MEASAGSSPP HSQENPPEHG GDMGGAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS 60 STFSSNSSSN SSSAYTNTAG RAGGEPSEPA SAGEGFDALD DIDQLLDFAS LSMPWDSEPF 120 PGVSMMLENA MSAPPQPVGD GMSEEKAVPE GTTGGEEACM DASEGEELPR FFMEWLTSNR 180 ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLQR KRPRDVMEEE 240 AGLHVQLPSP VANPPGYEFP AGGQDMAAGG GTSWMPHQQA FTPPAAYGGD AVYPSAAGQQ 300 YSFHQGPSTS SVVVNSQPFS PPPVGDMHGA NMAWPQQYVP FPPPGASTGS YPMPQPFSPG 360 FGGQYAGAGA GHLSVAPQRM AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSLGQIQA 420 SVHLQEPSPR STHSGPVTPS AGGWGFWSPS SQQQVQNPLS KSNSSRAPPP SLEAAAVAPQ 480 TKPAPAGARQ DDIHHRLAAA SDKRQGAKAD KNLRFLLQKV LKQSDVGSLG RIVLPKEAEV 540 HLPELKTRDG ISIPMEDIGT SRVWNMRYRF WPNNKSRMYL LENTGEFVRS NELQEGDFIV 600 IYSDVKSGKY LIRGVKVRPP PAQEQGSGSS GGGKHRPLCP AGPGRAAAAG APEDAVVDGV 660 SGACKGRSPE GVRRVRQQGA GAMSQMAVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 9e-35 | 513 | 616 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 9e-35 | 513 | 616 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24 | 0.0 | embryo| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G133398 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Between 10 and 30 days after pollination. | |||||
Uniprot | TISSUE SPECIFICITY: Seed. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G133398_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060994 | 0.0 | BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008673439.1 | 0.0 | regulatory protein viviparous-1 isoform X1 | ||||
Swissprot | P26307 | 0.0 | VIV1_MAIZE; Regulatory protein viviparous-1 | ||||
TrEMBL | C0HF88 | 0.0 | C0HF88_MAIZE; Uncharacterized protein | ||||
TrEMBL | K4JFM5 | 0.0 | K4JFM5_MAIZE; ABI3VP1-type transcription factor (Fragment) | ||||
STRING | GRMZM2G133398_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-64 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G133398_P02 |
Entrez Gene | 542523 |
Publications ? help Back to Top | |||
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