PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G133331_P01 | ||||||||
Common Name | LOC107403067, Zm.18774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 432aa MW: 46925.1 Da PI: 7.4583 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.4 | 4.8e-11 | 147 | 190 | 3 | 46 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 + k++rr+++NReAAr+sR RKka+i eLe+ +L+ ++L+ GRMZM2G133331_P01 147 DHKAQRRLAQNREAARKSRMRKKAYIVELENSRSKLSHLEQELQ 190 779****************************9999998887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-9 | 142 | 192 | No hit | No description |
SMART | SM00338 | 2.8E-8 | 145 | 208 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.358 | 147 | 191 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.9E-8 | 148 | 190 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.96E-8 | 149 | 192 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 152 | 167 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.5E-28 | 231 | 306 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MHRQPSPHAF SSSGSWAEQG AGGYRHGRDG ATFLLPELLQ RSPNPSSKSS SAATFVPPLA 60 AAHGGGVAAP FGMAPLGVAA ADEARFCMTP WSAAAHFENW GDSGIVVTSP LAETASTDVD 120 MGGGGAMAQS VDGHDNSLPA CKVEPRDHKA QRRLAQNREA ARKSRMRKKA YIVELENSRS 180 KLSHLEQELQ RARQQGMFIA SGRSGDHGCS TGGALAFDLE YARWLDEHQH HMNDLRVALS 240 AQIGDDDLGV LVDGAMLHYD QMFRLKGVAT RTDVFHVLSG MWMSPAERFF MWLGGFRSSE 300 LLKVLARHVE PLTEQQLVGI CGLQQSLQQA EDALSQGMEA LQQALGDTLA AAATPCAADS 360 VTNYMGQMAV AMSKLATVEN FLRQADLLRQ QTLKQVRRIL TTRQAARALL VISDYFSRLR 420 ALSSLWLTRP TD |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G133331 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G133331_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085145 | 0.0 | BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308277.1 | 0.0 | uncharacterized protein LOC107403067 | ||||
Swissprot | Q5Z6N9 | 1e-171 | TGAL3_ORYSJ; Transcription factor TGAL3 | ||||
TrEMBL | A0A1D6LWH9 | 0.0 | A0A1D6LWH9_MAIZE; Transcription factor PERIANTHIA | ||||
STRING | GRMZM2G133331_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-121 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G133331_P01 |
Entrez Gene | 107403067 |
Publications ? help Back to Top | |||
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