PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G133262_P02 | ||||||||
Common Name | Zm.90876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARR-B | ||||||||
Protein Properties | Length: 218aa MW: 24293.9 Da PI: 7.1653 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 29.9 | 1.3e-09 | 185 | 208 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 +r+ Wt eLHe+F+eave LGG++ GRMZM2G133262_P02 185 NRVTWTIELHEKFLEAVEALGGNK 208 79********************86 PP | |||||||
2 | Response_reg | 29.4 | 4.1e-11 | 8 | 119 | 2 | 105 |
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.....HHHHESEEEEESSCTTS.....EHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealell.....kekdpDlillDiempgm.....dGlellkeireeepklpiivvtahgee 83 l+ d +p+ ++ + + l k ++ +v +++++e+al+ + k+ d Dl+l+ +++ +m +l+ +i +e ++p ++ ++++e GRMZM2G133262_P02 8 LVLDGDPASLSTISETLAKFNF-RVVSFQTAEAALDFIkcgaaKAADLDLVLVEVNLNNMapgtsANPDLFHHILNE-LQVPLTAMCSRDDE 97 77899*****************.***************666656666**********99764444455666676543.58************ PP HHHHHHHHTTESEEEESS--HH CS Response_reg 84 edalealkaGakdflsKpfdpe 105 e + +++++Ga +l Kp +++ GRMZM2G133262_P02 98 EALSKCMNLGACFHLLKPLNRR 119 ******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 5.1E-15 | 2 | 147 | No hit | No description |
SuperFamily | SSF52172 | 2.42E-14 | 2 | 136 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 20.666 | 6 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.49E-9 | 8 | 129 | No hit | No description |
Pfam | PF00072 | 1.8E-7 | 8 | 119 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 182 | 210 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MMERLSALVL DGDPASLSTI SETLAKFNFR VVSFQTAEAA LDFIKCGAAK AADLDLVLVE 60 VNLNNMAPGT SANPDLFHHI LNELQVPLTA MCSRDDEEAL SKCMNLGACF HLLKPLNRRS 120 FSILWHQALE HKSKKAAPQR PSLNDSTKNR MVSPSTEKPK EVLILERNNL SVPQSNGYEE 180 PKKQNRVTWT IELHEKFLEA VEALGGNKCK YSSYLHMA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G133262 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G133262_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645056.1 | 1e-147 | uncharacterized protein LOC103626423 isoform X2 | ||||
Refseq | XP_023155895.1 | 1e-147 | uncharacterized protein LOC103626423 isoform X1 | ||||
TrEMBL | A0A1D6GVS0 | 1e-146 | A0A1D6GVS0_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A1D6GVS2 | 1e-146 | A0A1D6GVS2_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6ESR6 | 1e-146 | A0A3L6ESR6_MAIZE; Two-component response regulator ORR26 | ||||
STRING | GRMZM2G133262_P01 | 1e-147 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62670.1 | 3e-11 | response regulator 20 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G133262_P02 |