PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G133262_P01
Common NameZm.90876
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARR-B
Protein Properties Length: 790aa    MW: 86477.5 Da    PI: 4.2612
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G133262_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like795.7e-25185238255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +r+ Wt eLHe+F+eave LGG++ A P +il+lm+vkgLt++h+ SHLQk+Rl
  GRMZM2G133262_P01 185 NRVTWTIELHEKFLEAVEALGGNKSARPEKILHLMNVKGLTVKHIGSHLQKHRL 238
                        79***************************************************8 PP
2Response_reg25.94.9e-1081192105
                        EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.....HHHHESEEEEESSCTTS.....EHHHHHHHHHHHTTTSEEEEEESTTTH CS
       Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealell.....kekdpDlillDiempgm.....dGlellkeireeepklpiivvtahgee 83 
                        l+ d +p+ ++ + + l k ++ +v +++++e+al+ +     k+ d Dl+l+ +++ +m        +l+ +i +e  ++p  ++ ++++e
  GRMZM2G133262_P01   8 LVLDGDPASLSTISETLAKFNF-RVVSFQTAEAALDFIkcgaaKAADLDLVLVEVNLNNMapgtsANPDLFHHILNE-LQVPLTAMCSRDDE 97 
                        77899*****************.***************666656666**********99764444455666676543.58************ PP

                        HHHHHHHHTTESEEEESS--HH CS
       Response_reg  84 edalealkaGakdflsKpfdpe 105
                        e + +++++Ga  +l Kp +++
  GRMZM2G133262_P01  98 EALSKCMNLGACFHLLKPLNRR 119
                        ******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.5E-142147No hitNo description
SuperFamilySSF521724.27E-132136IPR011006CheY-like superfamily
PROSITE profilePS5011020.6666129IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.80E-88129No hitNo description
PfamPF000722.2E-68119IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129414.258181241IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-24182241IPR009057Homeodomain-like
SuperFamilySSF466893.23E-14182242IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-19185239IPR006447Myb domain, plants
PfamPF002497.0E-8186237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MMERLSALVL DGDPASLSTI SETLAKFNFR VVSFQTAEAA LDFIKCGAAK AADLDLVLVE  60
VNLNNMAPGT SANPDLFHHI LNELQVPLTA MCSRDDEEAL SKCMNLGACF HLLKPLNRRS  120
FSILWHQALE HKSKKAAPQR PSLNDSTKNR MVSPSTEKPK EVLILERNNL SVPQSNGYEE  180
PKKQNRVTWT IELHEKFLEA VEALGGNKSA RPEKILHLMN VKGLTVKHIG SHLQKHRLRN  240
QNTKQGQRQE NASRKPISRQ GEATSESITP RVETDGEVYP SRLWTKVKKR SVDTSALKTG  300
MHTCTSGNDN EGTESVWDRY ENNLQVFAEN KKRWMFTSEH QWPRRNNIDT TDEGDPNEAP  360
ETAAGASIEI FGSSSLISDQ VGEKNRVESD RDNNTVWSTD LLEGYGASIE SSGSSSLLAN  420
DQVGENNHSE AARANDSMGN ITLLEEIAYG GAYIGTSGSG SLLTGDLVRQ NGCAEATRHN  480
DNLWGVNLPQ GYGAFTEISG SSNMLTSYQV GENNGTEFAR DNGHMENISL LEVYGASIEN  540
AGSSSMLTSD QVGQSNLTEA DRIYDTMGSI NYLEGTVDPE YIAPMDYSVA WAHLEGNGPD  600
LRSPSDGREE AYSFWMSQLA GPQDYQSLGP EGFLQVGDDA YNDALRSVGL VNVDEQATQG  660
WQEQQSLSME DLLQVDDVAW DDTLISMGLI NLLDEPMAEE AAIGGSQGQQ SLAPEVLQAG  720
DNAYGDDLGS IEMVNLLNEP MTQEAAIADA LVDDPMTLIA QDDVPWAWSP AVPGDYGIDW  780
IQDPNAELYG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.908761e-171meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G133262
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G133262_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023155895.10.0uncharacterized protein LOC103626423 isoform X1
TrEMBLA0A3L6ESR60.0A0A3L6ESR6_MAIZE; Two-component response regulator ORR26
STRINGGRMZM2G133262_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Representative plantOGRP1067657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-18response regulator 11