PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G132971_P02 | ||||||||
Common Name | LOC100281501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 117aa MW: 13244 Da PI: 8.5123 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 78.7 | 9.7e-25 | 40 | 98 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d++++ ++sws+ +nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+Y GRMZM2G132971_P02 40 FLTKTYDMVDDPTTNAVVSWSAANNSFVVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTY 98 9********************999**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-26 | 34 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-25 | 36 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.67E-23 | 38 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.8E-15 | 40 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.3E-21 | 40 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-15 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-15 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MSHGNGMLNS VKVERWPAAV AANGQPRPMD VLHDGSSPPF LTKTYDMVDD PTTNAVVSWS 60 AANNSFVVWD PHIFGTVLLP RYFKHNNFSS FVRQLNTYVA VLPCLFLRLW NHARRDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-18 | 38 | 98 | 27 | 87 | Heat shock factor protein 1 |
5d5v_B | 5e-18 | 38 | 98 | 27 | 87 | Heat shock factor protein 1 |
5d5v_D | 5e-18 | 38 | 98 | 27 | 87 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.82658 | 1e-166 | aerial organ| ear| embryo| leaf| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G132971 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G132971_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041877 | 1e-164 | BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds. | |||
GenBank | BT088410 | 1e-164 | BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds. | |||
GenBank | EU956923 | 1e-164 | EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds. | |||
GenBank | JX428494 | 1e-164 | JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147891.1 | 6e-67 | uncharacterized protein LOC100281501 | ||||
Swissprot | Q6F388 | 3e-47 | HFA2E_ORYSJ; Heat stress transcription factor A-2e | ||||
TrEMBL | B4FXN9 | 1e-65 | B4FXN9_MAIZE; Heat shock factor protein HSF30 | ||||
TrEMBL | K0DCQ1 | 1e-65 | K0DCQ1_MAIZE; HSF11 transcription factor (Fragment) | ||||
STRING | GRMZM2G132971_P01 | 2e-66 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-36 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G132971_P02 |
Publications ? help Back to Top | |||
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