PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G132756_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 558aa MW: 59111.9 Da PI: 6.0547 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 97 | 115 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++Cgk F++ +++ +H r GRMZM2G132756_P01 97 CKNCGKEFTSLELFLQHAR 115 *****************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-5 | 11 | 37 | No hit | No description |
PROSITE profile | PS50157 | 9.536 | 14 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0013 | 15 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 16 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 95 | 115 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-9 | 256 | 281 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.58E-8 | 256 | 279 | No hit | No description |
SMART | SM00355 | 0.13 | 257 | 279 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.221 | 257 | 284 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 259 | 279 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.58E-8 | 392 | 419 | No hit | No description |
PROSITE profile | PS50157 | 9.182 | 397 | 419 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.7E-11 | 397 | 420 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 397 | 419 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 399 | 419 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MPPSPPPSPP EYKHFCRVCN KGFTCGSALG GHMRAHGPAS DVDGFGVVDD DDGSLDEEGV 60 TRCPGADEWD DAVGTSATHA YALRANPNRL IRSCQLCKNC GKEFTSLELF LQHARCSRSE 120 DEGGGGEEEQ VGSPVPSSSS PPTNADGGGD EDPILATPWS KGKRSRRVGT TEEDPSTSTV 180 GEEEDLAKCL VMLSSSKSNI NDQEANVIAT ITKDDHHHQK QPIPFFTQSQ ESVVAALPSS 240 PLVVPQYISP APRGGVFECK ACKKVFTSHQ ALGGHRASHK KVKGCFAAKF ETSNATESTR 300 HHQVVAVNIA KDGRNNDNGK APAVDEIINA GASASASAHV PGGFATTIVD TNIGTSSDTP 360 RSLYSSMALA PIVEHNPLVE TTLAVAAAQF KKSTKMHECS VCHRLFTSGQ ALGGHKRCHW 420 LTSNTSDPCN TVTASMIPSL TEDFVGGVVK QQFNLQPQPM VVDVPPPVLD LTIAPNATVA 480 HLQPLAVAAP SNVNHQKKDA TRKKYAIDAV MEEEEADSTP AKRAKISDLK DMVSMDGEPT 540 KPWLQVGIGS SSAPGDDS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G132756 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G132756_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008669046.1 | 0.0 | uncharacterized protein LOC103646103 | ||||
Refseq | XP_008669047.1 | 0.0 | uncharacterized protein LOC103646103 | ||||
Refseq | XP_008669048.1 | 0.0 | uncharacterized protein LOC103646103 | ||||
TrEMBL | A0A1D6E3W4 | 0.0 | A0A1D6E3W4_MAIZE; C2H2-type zinc finger family protein | ||||
STRING | GRMZM2G132756_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 | Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 4e-12 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G132756_P01 |