PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132550_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 318aa    MW: 35817.6 Da    PI: 7.951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132550_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13220265554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h   Er+RR++iN++fe L+  lP++    + K +K +iL +A +YI+sL
  GRMZM2G132550_P01 220 HVRSERKRREKINDSFEALKNALPPS----CCKRDKTSILMRARDYINSL 265
                        6678*********************7....69****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15212274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.07E-13213270No hitNo description
PROSITE profilePS5088814.316215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14220275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11220265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDGCRAVLTG DMQCHEATMS SCDSDHLHRE RGEQGLISSQ LQQQLEQIYM LMDMELEHEL  60
HLHHNVPPQG CSQRQLSSPF LPFAVSSDVT SSPVLTSSST TTFCQQPAEA SPSPLDTPFS  120
PLPYSYSDTI PDLEEIMSRP RHKDGHAESG TSAFRQYVRH LRPKKKLKQG GCGQRAIKTA  180
MSVLARMHSS RLSQWQRQIS STEMAAAVPS DESKNIQLLH VRSERKRREK INDSFEALKN  240
ALPPSCCKRD KTSILMRARD YINSLKSRVS ELEENGKSKL DIHVPFKFKA CDDNNFVKQS  300
VSVIQTVKCT MQSEIETP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168PKKKLKQ
2223228ERKRRE
3224229RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132550
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132550_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649446.10.0putative transcription factor bHLH041
TrEMBLA0A1D6M0861e-169A0A1D6M086_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G132550_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-11bHLH family protein